Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 658947..659148 | Replicon | chromosome |
| Accession | NZ_CP033466 | ||
| Organism | Enterobacter cloacae strain E3442 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 659040..659143 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 658947..659148 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EEI76_RS03025 | 655484..656146 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| EEI76_RS03030 | 656171..656821 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| EEI76_RS03035 | 656933..657163 | - | 231 | WP_123060432.1 | DNA polymerase III subunit theta | - |
| EEI76_RS03040 | 657301..657672 | + | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
| EEI76_RS03045 | 657674..658543 | + | 870 | WP_058675126.1 | copper homeostasis membrane protein CopD | - |
| EEI76_RS03050 | 658560..658898 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 658947..659148 | - | 202 | - | - | Antitoxin |
| EEI76_RS03055 | 659024..659221 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 659040..659143 | + | 104 | - | - | Toxin |
| EEI76_RS03060 | 659267..660247 | - | 981 | WP_123060433.1 | VirK/YbjX family protein | - |
| EEI76_RS03065 | 660415..661059 | + | 645 | WP_123060434.1 | protein-serine/threonine phosphatase | - |
| EEI76_RS03070 | 661094..661333 | - | 240 | WP_003859885.1 | YebV family protein | - |
| EEI76_RS03075 | 661440..662888 | - | 1449 | WP_196348671.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T113726 NZ_CP033466:659040-659143 [Enterobacter cloacae]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT113726 NZ_CP033466:c659148-658947 [Enterobacter cloacae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACATTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACATTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
