Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2079819..2080090 | Replicon | chromosome |
| Accession | NZ_CP033378 | ||
| Organism | Escherichia coli strain L73 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2079949..2080052 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2079819..2080090 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EB670_RS10210 | 2076374..2077036 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| EB670_RS10215 | 2077060..2077716 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EB670_RS10220 | 2077818..2078048 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EB670_RS10225 | 2078187..2078561 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EB670_RS10230 | 2078565..2079437 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| EB670_RS10235 | 2079450..2079791 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2079819..2080090 | - | 272 | - | - | Antitoxin |
| - | 2079949..2080052 | + | 104 | - | - | Toxin |
| EB670_RS10240 | 2080187..2080843 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| EB670_RS10245 | 2080844..2081035 | - | 192 | WP_001338167.1 | YebW family protein | - |
| EB670_RS10250 | 2081140..2081376 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| EB670_RS10255 | 2081494..2082933 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T113567 NZ_CP033378:2079949-2080052 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT113567 NZ_CP033378:c2080090-2079819 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
