Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2742208..2742479 | Replicon | chromosome |
| Accession | NZ_CP033250 | ||
| Organism | Escherichia coli strain ECCHD184 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2742246..2742349 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2742208..2742479 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D3W51_RS13230 | 2739365..2740804 | + | 1440 | WP_122224824.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| D3W51_RS13235 | 2740922..2741158 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| D3W51_RS13240 | 2741263..2741454 | + | 192 | WP_000457842.1 | YebW family protein | - |
| D3W51_RS13245 | 2741455..2742111 | - | 657 | WP_122224683.1 | protein-serine/threonine phosphatase | - |
| - | 2742208..2742479 | + | 272 | - | - | Antitoxin |
| - | 2742246..2742349 | - | 104 | - | - | Toxin |
| D3W51_RS13250 | 2742507..2742848 | - | 342 | WP_000976476.1 | YebY family protein | - |
| D3W51_RS13255 | 2742861..2743733 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| D3W51_RS13260 | 2743737..2744111 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| D3W51_RS13265 | 2744250..2744480 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| D3W51_RS13270 | 2744582..2745238 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| D3W51_RS13275 | 2745262..2745924 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T113490 NZ_CP033250:c2742349-2742246 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT113490 NZ_CP033250:2742208-2742479 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
