Detailed information of TA system TA113393

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): pmenTA/darT(toxin)
• Location: 4756411..4757156
• Replicon: chromosome
• Accession: NZ_CP033201
• Organism: Xanthomonas oryzae pv. oryzae strain BXO1

Toxin (Protein)

• Gene name: pmenT
• Uniprot ID: -
• Locus tag: BXO1_RS23745
• Protein ID: WP_205420989.1
• Coordinates: 4756827..4757156 (-)
• Length: 110 a.a.

Antitoxin (Protein)

• Gene name: pmenA
• Uniprot ID: -
• Locus tag: BXO1_RS23740
• Protein ID: WP_237384720.1
• Coordinates: 4756411..4756830 (-)
• Length: 140 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
BXO1_RS23715 (BXO1_023630)	4751944..4752582	-	639	WP_011407753.1	phosphate phosphatase	-
BXO1_RS23720 (BXO1_023635)	4752735..4753703	-	969	WP_011258188.1	IS5-like element ISXo1 family transposase	-
BXO1_RS23725 (BXO1_023640)	4753840..4755175	+	1336	Protein_4255	IS701 family transposase	-
BXO1_RS23730 (BXO1_023645)	4755388..4756359	-	972	WP_151427527.1	IS5 family transposase	-
BXO1_RS23740 (BXO1_023655)	4756411..4756830	-	420	WP_237384720.1	macro domain-containing protein	Antitoxin
BXO1_RS23745 (BXO1_023660)	4756827..4757156	-	330	WP_205420989.1	DUF4433 domain-containing protein	Toxin
BXO1_RS23750 (BXO1_023665)	4757259..4758578	+	1320	WP_109182077.1	IS701-like element ISXo15 family transposase	-
BXO1_RS23760 (BXO1_023675)	4758622..4758957	-	336	WP_011407757.1	DarT ssDNA thymidine ADP-ribosyltransferase family protein	-
BXO1_RS23765 (BXO1_023680)	4759289..4760215	-	927	WP_011257932.1	Grx4 family monothiol glutaredoxin	-
BXO1_RS23770 (BXO1_023685)	4760261..4761052	+	792	WP_171970779.1	polysaccharide deacetylase family protein	-
BXO1_RS23780 (BXO1_023695)	4761355..4762026	-	672	WP_011407759.1	class I SAM-dependent methyltransferase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	IScluster/Tn	-	-	4750671..4758578	7907

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• ssDNA thymidine ADP-ribosyltransferase, DarT (3-108)

Antitoxin

• Macro domain (18-130)

Sequences

Toxin

Protein

• Length: 110 a.a.
• Molecular weight: 13159.89 Da
• Isoelectric Point: 7.1161

>T113393 WP_205420989.1 NZ_CP033201:c4757156-4756827 [Xanthomonas oryzae pv. oryzae]
MHHVAERRWPFLFTDSHAYCQLASFYSELSDLDKIDWPLLQARDFRRDPDDPAKFERYQAEALIHRHLPLDGLRGIVCHT
DGLKQTIERQLQERNLKLPVHTRTDWYFR

Nucleotide

• Length: 330 bp

>T113393 NZ_CP033201:c4757156-4756827 [Xanthomonas oryzae pv. oryzae]
TTGCATCATGTCGCCGAACGCCGATGGCCGTTTCTGTTTACTGACAGCCACGCCTACTGCCAGTTGGCGAGCTTCTATTC
CGAGTTATCTGATCTCGACAAGATCGACTGGCCGTTGCTCCAAGCACGCGATTTCCGGCGCGACCCAGACGACCCAGCCA
AGTTCGAGCGCTATCAGGCCGAGGCCCTGATTCACCGACACTTGCCGCTTGATGGCCTGCGCGGCATTGTGTGTCATACG
GATGGTTTGAAACAGACCATCGAGCGGCAACTCCAAGAGCGAAACCTGAAATTGCCGGTTCATACCCGCACCGATTGGTA
TTTCCGATGA

Antitoxin

Protein

• Length: 140 a.a.
• Molecular weight: 15621.05 Da
• Isoelectric Point: 6.4733

>AT113393 WP_237384720.1 NZ_CP033201:c4756830-4756411 [Xanthomonas oryzae pv. oryzae]
MITFTQGNLLESGAEALVNTVNTVGVMGKGIALMFKERFKENFLRYAAACKDNQLRIGKIFVTEVNELDGPRWIINFPTK
QHWRGDSRIEWITEGLQDLHRFLIENKVKSIAIPPLGAGNGGLDWAEVRPLIEEVLGNL

Nucleotide

• Length: 420 bp

>AT113393 NZ_CP033201:c4756830-4756411 [Xanthomonas oryzae pv. oryzae]
ATGATCACGTTTACACAAGGCAATCTACTGGAGTCTGGCGCAGAGGCGCTGGTCAACACCGTCAACACCGTCGGCGTGAT
GGGCAAGGGCATCGCGCTGATGTTCAAGGAGCGCTTCAAGGAGAACTTCCTCCGATATGCCGCCGCCTGCAAAGACAACC
AATTGCGCATTGGCAAAATTTTCGTCACCGAAGTCAACGAACTGGACGGGCCACGCTGGATCATCAATTTTCCGACCAAA
CAGCACTGGCGTGGCGATTCCCGCATCGAATGGATCACTGAAGGATTGCAGGACTTGCACCGTTTTCTGATCGAGAACAA
AGTCAAATCCATTGCCATCCCGCCACTGGGCGCGGGCAATGGAGGATTGGACTGGGCCGAGGTGCGCCCACTGATCGAAG
AAGTACTAGGGAACCTCTGA