Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 1174783..1176503 Replicon chromosome
Accession NZ_CP033194
Organism Xanthomonas oryzae pv. oryzae strain CIAT

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag EBA18_RS05775 Protein ID WP_075244498.1
Coordinates 1175850..1176503 (-) Length 218 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag EBA18_RS05770 Protein ID WP_075244497.1
Coordinates 1174783..1175853 (-) Length 357 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EBA18_RS05755 1170939..1172540 - 1602 WP_011407751.1 rhamnogalacturonase B -
EBA18_RS05760 1172901..1173227 - 327 Protein_1046 hypothetical protein -
EBA18_RS05765 1173529..1174745 + 1217 Protein_1047 ISL3 family transposase -
EBA18_RS05770 1174783..1175853 - 1071 WP_075244497.1 macro domain-containing protein Antitoxin
EBA18_RS05775 1175850..1176503 - 654 WP_075244498.1 DUF4433 domain-containing protein Toxin
EBA18_RS05780 1176835..1177761 - 927 WP_011257932.1 Grx4 family monothiol glutaredoxin -
EBA18_RS05785 1177807..1178598 + 792 WP_171970779.1 polysaccharide deacetylase family protein -
EBA18_RS05795 1178900..1179571 - 672 WP_011407759.1 methyltransferase -
EBA18_RS05800 1179894..1180532 - 639 WP_011407760.1 SGNH/GDSL hydrolase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(16-216)

Antitoxin

Macro domain

(18-130)


Sequences

Toxin        


Download         Length: 218 a.a.        Molecular weight: 25229.65 Da        Isoelectric Point: 8.3240

>T113374 WP_075244498.1 NZ_CP033194:c1176503-1175850 [Xanthomonas oryzae pv. oryzae]
MAEHYSKLNPKNALIWRITHRGNLPWILDNGLHCGNAAVQSSSWVSIGNPELIDKRSSHAVPRPPGGFLNDYVPFYFTPF
SPMLHNIHTGWRGIPRRPNEDIVILVSSLHHVAERRWPFLFTDSHASCQLASFYSDLSDLDKIDWPLLQARDFRRDPDDP
AKFERYQAEALIHRHLPLDGLRGIVCHTDGLKQTIERQLQERNLKLPVHTRTDWYFR

Download         Length: 654 bp

>T113374 NZ_CP033194:c1176503-1175850 [Xanthomonas oryzae pv. oryzae]
ATGGCTGAGCATTACTCCAAACTCAACCCAAAGAACGCCCTGATCTGGCGCATCACCCACCGGGGCAATCTGCCGTGGAT
TCTGGACAACGGTCTGCACTGTGGTAATGCCGCTGTGCAGAGTTCGAGTTGGGTGAGCATCGGCAACCCAGAACTGATCG
ACAAGCGCTCCAGTCATGCTGTACCGCGTCCACCGGGCGGCTTCTTAAACGATTACGTGCCGTTCTACTTCACTCCGTTT
TCGCCGATGCTGCACAACATCCATACCGGCTGGCGTGGAATCCCAAGGCGGCCTAACGAAGACATCGTCATCCTTGTTTC
CAGCTTGCATCATGTCGCCGAACGCCGATGGCCGTTTCTGTTTACTGACAGCCACGCCTCCTGCCAGTTGGCGAGCTTCT
ATTCCGATTTATCTGATCTCGACAAGATCGACTGGCCGTTGCTCCAAGCACGCGATTTCCGGCGCGACCCAGACGACCCA
GCCAAGTTCGAGCGCTATCAGGCCGAGGCCCTGATTCACCGACACTTGCCGCTTGATGGCCTGCGCGGCATTGTGTGTCA
TACGGATGGTTTGAAACAGACCATCGAGCGGCAACTCCAAGAGCGAAACCTGAAATTGCCGGTTCATACCCGCACCGATT
GGTATTTCCGATGA

Antitoxin


Download         Length: 357 a.a.        Molecular weight: 39942.02 Da        Isoelectric Point: 6.0080

>AT113374 WP_075244497.1 NZ_CP033194:c1175853-1174783 [Xanthomonas oryzae pv. oryzae]
MITFTQGNLLESGAEALVNTVNTVGVMGKGIALMFKERFKENFLRYAAACKDNQVRIGKIFVTEVNELDGPRWIINFPTK
QHWRGDSRIEWITEGLQDLHLFLIENKVKSIAIPPLGAGNGGLDWAEVRPLIEEVLAGLDTDILVFEPTLKYQNVAKRSG
VEKLTPARALIAELVRRYWVLGMECGLLEIQKLAWFLERNIERAGLPELDLRFSAHKYGPYADRLRHLLNGLDGSYLHCD
KRISDADPLDVIWFDDNRKSFVQTYLKSEAKQYIPALEATAALIDGFESPFGMELLATVDWLIVREGISAQVADVREGIR
HWPGGQEAAARKDRLFDDRALGIALKRLASGAIAVA

Download         Length: 1071 bp

>AT113374 NZ_CP033194:c1175853-1174783 [Xanthomonas oryzae pv. oryzae]
ATGATCACGTTTACACAAGGCAATCTACTGGAGTCTGGCGCAGAGGCGCTGGTCAACACCGTCAACACCGTCGGCGTGAT
GGGCAAGGGCATCGCGCTGATGTTCAAGGAGCGCTTCAAGGAGAACTTCCTCCGATATGCCGCCGCCTGCAAAGACAACC
AAGTGCGCATTGGCAAAATTTTCGTCACCGAAGTCAACGAACTGGACGGGCCACGCTGGATCATCAATTTTCCGACCAAA
CAGCACTGGCGTGGCGATTCCCGCATCGAATGGATCACTGAAGGATTGCAGGACTTGCACCTTTTTCTGATCGAGAACAA
AGTCAAATCCATTGCCATCCCGCCACTGGGCGCGGGCAATGGAGGATTGGACTGGGCCGAGGTGCGCCCACTGATCGAAG
AAGTACTAGCAGGTTTGGATACAGACATCCTCGTGTTCGAGCCTACCTTAAAGTATCAGAACGTTGCCAAGCGCTCCGGC
GTGGAAAAATTGACCCCGGCACGCGCCTTGATTGCCGAGCTGGTACGTCGTTACTGGGTGCTAGGTATGGAATGCGGCCT
GTTGGAAATCCAGAAACTGGCGTGGTTCCTTGAACGCAACATCGAGCGAGCGGGCTTGCCTGAGCTTGATTTGCGCTTTT
CAGCACACAAGTACGGCCCTTATGCCGACCGTCTACGCCATCTTCTGAACGGGCTGGACGGAAGCTACCTGCATTGTGAC
AAACGGATCAGCGACGCCGACCCGCTGGACGTGATCTGGTTCGACGACAATCGCAAAAGCTTCGTACAGACCTACCTAAA
GAGCGAGGCGAAACAGTACATTCCAGCACTGGAAGCTACTGCCGCCTTGATCGATGGTTTTGAATCTCCTTTTGGCATGG
AGTTGTTGGCGACAGTTGACTGGCTGATTGTGCGGGAAGGTATCTCTGCGCAAGTTGCTGACGTGCGTGAAGGCATACGC
CACTGGCCAGGTGGTCAGGAGGCAGCGGCGCGAAAGGACAGACTGTTCGATGACCGCGCCTTGGGGATCGCGCTGAAACG
ACTGGCATCAGGTGCAATCGCAGTGGCTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References