Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 1174494..1176214 Replicon chromosome
Accession NZ_CP033192
Organism Xanthomonas oryzae pv. oryzae strain NX0260

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag EBA21_RS05775 Protein ID WP_075244498.1
Coordinates 1175561..1176214 (-) Length 218 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag EBA21_RS05770 Protein ID WP_075244497.1
Coordinates 1174494..1175564 (-) Length 357 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EBA21_RS05755 1170650..1172251 - 1602 WP_011407751.1 rhamnogalacturonase B -
EBA21_RS05760 1172612..1172938 - 327 Protein_1047 hypothetical protein -
EBA21_RS05765 1173240..1174456 + 1217 Protein_1048 ISL3 family transposase -
EBA21_RS05770 1174494..1175564 - 1071 WP_075244497.1 macro domain-containing protein Antitoxin
EBA21_RS05775 1175561..1176214 - 654 WP_075244498.1 DUF4433 domain-containing protein Toxin
EBA21_RS05780 1176546..1177472 - 927 WP_011257932.1 Grx4 family monothiol glutaredoxin -
EBA21_RS05785 1177518..1178309 + 792 WP_171970779.1 polysaccharide deacetylase family protein -
EBA21_RS05795 1178611..1179282 - 672 WP_011407759.1 methyltransferase -
EBA21_RS05800 1179605..1180243 - 639 WP_011407760.1 SGNH/GDSL hydrolase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(16-216)

Antitoxin

Macro domain

(18-130)


Sequences

Toxin        


Download         Length: 218 a.a.        Molecular weight: 25229.65 Da        Isoelectric Point: 8.3240

>T113365 WP_075244498.1 NZ_CP033192:c1176214-1175561 [Xanthomonas oryzae pv. oryzae]
MAEHYSKLNPKNALIWRITHRGNLPWILDNGLHCGNAAVQSSSWVSIGNPELIDKRSSHAVPRPPGGFLNDYVPFYFTPF
SPMLHNIHTGWRGIPRRPNEDIVILVSSLHHVAERRWPFLFTDSHASCQLASFYSDLSDLDKIDWPLLQARDFRRDPDDP
AKFERYQAEALIHRHLPLDGLRGIVCHTDGLKQTIERQLQERNLKLPVHTRTDWYFR

Download         Length: 654 bp

>T113365 NZ_CP033192:c1176214-1175561 [Xanthomonas oryzae pv. oryzae]
ATGGCTGAGCATTACTCCAAACTCAACCCAAAGAACGCCCTGATCTGGCGCATCACCCACCGGGGCAATCTGCCGTGGAT
TCTGGACAACGGTCTGCACTGTGGTAATGCCGCTGTGCAGAGTTCGAGTTGGGTGAGCATCGGCAACCCAGAACTGATCG
ACAAGCGCTCCAGTCATGCTGTACCGCGTCCACCGGGCGGCTTCTTAAACGATTACGTGCCGTTCTACTTCACTCCGTTT
TCGCCGATGCTGCACAACATCCATACCGGCTGGCGTGGAATCCCAAGGCGGCCTAACGAAGACATCGTCATCCTTGTTTC
CAGCTTGCATCATGTCGCCGAACGCCGATGGCCGTTTCTGTTTACTGACAGCCACGCCTCCTGCCAGTTGGCGAGCTTCT
ATTCCGATTTATCTGATCTCGACAAGATCGACTGGCCGTTGCTCCAAGCACGCGATTTCCGGCGCGACCCAGACGACCCA
GCCAAGTTCGAGCGCTATCAGGCCGAGGCCCTGATTCACCGACACTTGCCGCTTGATGGCCTGCGCGGCATTGTGTGTCA
TACGGATGGTTTGAAACAGACCATCGAGCGGCAACTCCAAGAGCGAAACCTGAAATTGCCGGTTCATACCCGCACCGATT
GGTATTTCCGATGA

Antitoxin


Download         Length: 357 a.a.        Molecular weight: 39942.02 Da        Isoelectric Point: 6.0080

>AT113365 WP_075244497.1 NZ_CP033192:c1175564-1174494 [Xanthomonas oryzae pv. oryzae]
MITFTQGNLLESGAEALVNTVNTVGVMGKGIALMFKERFKENFLRYAAACKDNQVRIGKIFVTEVNELDGPRWIINFPTK
QHWRGDSRIEWITEGLQDLHLFLIENKVKSIAIPPLGAGNGGLDWAEVRPLIEEVLAGLDTDILVFEPTLKYQNVAKRSG
VEKLTPARALIAELVRRYWVLGMECGLLEIQKLAWFLERNIERAGLPELDLRFSAHKYGPYADRLRHLLNGLDGSYLHCD
KRISDADPLDVIWFDDNRKSFVQTYLKSEAKQYIPALEATAALIDGFESPFGMELLATVDWLIVREGISAQVADVREGIR
HWPGGQEAAARKDRLFDDRALGIALKRLASGAIAVA

Download         Length: 1071 bp

>AT113365 NZ_CP033192:c1175564-1174494 [Xanthomonas oryzae pv. oryzae]
ATGATCACGTTTACACAAGGCAATCTACTGGAGTCTGGCGCAGAGGCGCTGGTCAACACCGTCAACACCGTCGGCGTGAT
GGGCAAGGGCATCGCGCTGATGTTCAAGGAGCGCTTCAAGGAGAACTTCCTCCGATATGCCGCCGCCTGCAAAGACAACC
AAGTGCGCATTGGCAAAATTTTCGTCACCGAAGTCAACGAACTGGACGGGCCACGCTGGATCATCAATTTTCCGACCAAA
CAGCACTGGCGTGGCGATTCCCGCATCGAATGGATCACTGAAGGATTGCAGGACTTGCACCTTTTTCTGATCGAGAACAA
AGTCAAATCCATTGCCATCCCGCCACTGGGCGCGGGCAATGGAGGATTGGACTGGGCCGAGGTGCGCCCACTGATCGAAG
AAGTACTAGCAGGTTTGGATACAGACATCCTCGTGTTCGAGCCTACCTTAAAGTATCAGAACGTTGCCAAGCGCTCCGGC
GTGGAAAAATTGACCCCGGCACGCGCCTTGATTGCCGAGCTGGTACGTCGTTACTGGGTGCTAGGTATGGAATGCGGCCT
GTTGGAAATCCAGAAACTGGCGTGGTTCCTTGAACGCAACATCGAGCGAGCGGGCTTGCCTGAGCTTGATTTGCGCTTTT
CAGCACACAAGTACGGCCCTTATGCCGACCGTCTACGCCATCTTCTGAACGGGCTGGACGGAAGCTACCTGCATTGTGAC
AAACGGATCAGCGACGCCGACCCGCTGGACGTGATCTGGTTCGACGACAATCGCAAAAGCTTCGTACAGACCTACCTAAA
GAGCGAGGCGAAACAGTACATTCCAGCACTGGAAGCTACTGCCGCCTTGATCGATGGTTTTGAATCTCCTTTTGGCATGG
AGTTGTTGGCGACAGTTGACTGGCTGATTGTGCGGGAAGGTATCTCTGCGCAAGTTGCTGACGTGCGTGAAGGCATACGC
CACTGGCCAGGTGGTCAGGAGGCAGCGGCGCGAAAGGACAGACTGTTCGATGACCGCGCCTTGGGGATCGCGCTGAAACG
ACTGGCATCAGGTGCAATCGCAGTGGCTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References