113315

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) EcnAB/-
Location 4260104..4260465 Replicon chromosome
Accession NZ_CP033172
Organism Xanthomonas oryzae pv. oryzae strain Dak16

Toxin (Protein)


Gene name EcnB Uniprot ID G7TLC7
Locus tag EBA14_RS20550 Protein ID WP_011257368.1
Coordinates 4260104..4260238 (-) Length 45 a.a.

Antitoxin (Protein)


Gene name EcnA Uniprot ID G7TLC8
Locus tag EBA14_RS20555 Protein ID WP_011407410.1
Coordinates 4260313..4260465 (-) Length 51 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EBA14_RS20535 4257121..4258143 - 1023 WP_165403720.1 MBL fold metallo-hydrolase -
EBA14_RS20540 4258196..4259485 - 1290 WP_024744479.1 tryptophan--tRNA ligase -
EBA14_RS20545 4259654..4259863 - 210 WP_024744478.1 CsbD family protein -
EBA14_RS20550 4260104..4260238 - 135 WP_011257368.1 entericidin A/B family lipoprotein Toxin
EBA14_RS20555 4260313..4260465 - 153 WP_011407410.1 entericidin A/B family lipoprotein Antitoxin
EBA14_RS20560 4260573..4261496 - 924 WP_053512953.1 arginase -
EBA14_RS20565 4261818..4262483 + 666 WP_024744476.1 hypothetical protein -
EBA14_RS20570 4262480..4263022 + 543 WP_024744475.1 GTPase -
EBA14_RS20580 4263538..4264221 + 684 WP_024744474.1 dTMP kinase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Entericidin A/B

(23-42)

Antitoxin

Entericidin A/B

(23-42)


Sequences

Toxin        


Download         Length: 45 a.a.        Molecular weight: 4457.33 Da        Isoelectric Point: 10.2040

>T113315 WP_011257368.1 NZ_CP033172:c4260238-4260104 [Xanthomonas oryzae pv. oryzae]
MKRAIVLLVLSMLSVGLLSGCNTVAGAGKDVKGAGEKVEDAARK

Download         Length: 135 bp

>T113315 NZ_CP033172:c4260238-4260104 [Xanthomonas oryzae pv. oryzae]
ATGAAGCGTGCAATTGTGCTGCTGGTGCTGTCCATGTTGTCGGTCGGTCTGCTGTCGGGCTGCAACACCGTCGCAGGTGC
CGGCAAGGACGTGAAGGGCGCCGGCGAGAAGGTGGAAGACGCAGCGCGTAAGTAA

Antitoxin


Download         Length: 51 a.a.        Molecular weight: 5046.99 Da        Isoelectric Point: 8.7942

>AT113315 WP_011407410.1 NZ_CP033172:c4260465-4260313 [Xanthomonas oryzae pv. oryzae]
MKRLLTLMVLGLFSAGVMTGCNTVAGAGKDLQGAGGKVEKTAEKCSDGKC

Download         Length: 153 bp

>AT113315 NZ_CP033172:c4260465-4260313 [Xanthomonas oryzae pv. oryzae]
ATGAAGCGACTGCTGACACTGATGGTGCTGGGCCTGTTTTCGGCCGGCGTGATGACGGGCTGCAACACCGTGGCTGGCGC
TGGCAAGGACTTGCAGGGCGCGGGTGGGAAGGTCGAGAAAACGGCCGAAAAATGCAGCGATGGTAAGTGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0C5UG40

Antitoxin

Source ID Structure
AlphaFold DB A0A0C5V759

References