Detailed information of TA system TA113312

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): mazEF/PRK09907-MazE
• Location: 1759966..1760543
• Replicon: chromosome
• Accession: NZ_CP033171
• Organism: Xanthomonas oryzae pv. oryzae strain T19

Toxin (Protein)

• Gene name: mazF
• Uniprot ID: -
• Locus tag: EBA15_RS08925
• Protein ID: WP_082324282.1
• Coordinates: 1760202..1760543 (+)
• Length: 114 a.a.

Antitoxin (Protein)

• Gene name: mazE
• Uniprot ID: A0A411Y3T7
• Locus tag: EBA15_RS08920
• Protein ID: WP_017154976.1
• Coordinates: 1759966..1760208 (+)
• Length: 81 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
EBA15_RS08900	1756128..1756712	-	585	WP_024743447.1	NAD(P)H-dependent oxidoreductase	-
EBA15_RS08905	1756812..1757828	+	1017	WP_024743446.1	LysR family transcriptional regulator	-
EBA15_RS08915	1758380..1759870	+	1491	WP_033003336.1	site-specific integrase	-
EBA15_RS08920	1759966..1760208	+	243	WP_017154976.1	hypothetical protein	Antitoxin
EBA15_RS08925	1760202..1760543	+	342	WP_082324282.1	type II toxin-antitoxin system PemK/MazF family toxin	Toxin
EBA15_RS08930	1760665..1761030	+	366	Protein_1614	transposase	-
EBA15_RS08935	1761096..1762197	+	1102	WP_107490965.1	IS3 family transposase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• mRNA interferase PemK-like (10-110)

Antitoxin

• Antitoxin PemI-like (4-76)

Sequences

Toxin

Protein

• Length: 114 a.a.
• Molecular weight: 12461.20 Da
• Isoelectric Point: 9.1473

>T113312 WP_082324282.1 NZ_CP033171:1760202-1760543 [Xanthomonas oryzae pv. oryzae]
MVNPGWVPRRSEIIHLDDVGGAGHEQRGDRPHLVLSSQGYNDTTSLVVCVPVTTKPKGNPFEVSLNDLNKPSVALTNQVM
TADWRSRNAFPRGFANKAEMLQVEAKVRALLQL

Nucleotide

• Length: 342 bp

>T113312 NZ_CP033171:1760202-1760543 [Xanthomonas oryzae pv. oryzae]
ATGGTAAATCCCGGGTGGGTTCCGCGCAGGTCAGAAATTATTCATTTGGATGATGTGGGTGGGGCCGGTCATGAGCAGCG
TGGGGACCGGCCACACTTGGTTCTCAGTTCGCAAGGCTACAACGACACAACTAGTCTAGTGGTTTGCGTTCCTGTCACAA
CTAAACCCAAAGGCAATCCTTTTGAAGTAAGCCTTAATGATTTGAACAAGCCAAGTGTTGCTTTAACAAATCAGGTCATG
ACGGCAGATTGGCGCAGTAGAAATGCTTTTCCCCGAGGGTTTGCTAATAAAGCTGAAATGCTCCAAGTTGAAGCCAAGGT
TCGCGCTTTGCTTCAACTTTGA

Antitoxin

Protein

• Length: 81 a.a.
• Molecular weight: 8786.89 Da
• Isoelectric Point: 4.3753

>AT113312 WP_017154976.1 NZ_CP033171:1759966-1760208 [Xanthomonas oryzae pv. oryzae]
MAVLKMWGNSAAVRIPATYLEESKFSIDEPLVITAEEGRIVIESSKPSYNLADLVAQITPENTHGFAGHSQRVGAEDIEW

Nucleotide

• Length: 243 bp

>AT113312 NZ_CP033171:1759966-1760208 [Xanthomonas oryzae pv. oryzae]
ATGGCTGTTTTGAAGATGTGGGGGAATAGTGCTGCAGTTCGAATCCCGGCGACCTATCTCGAGGAGTCCAAGTTTTCTAT
TGACGAGCCTCTTGTAATCACTGCGGAGGAAGGTCGCATTGTGATCGAGTCGAGTAAGCCGTCTTATAACCTCGCGGACT
TGGTTGCTCAAATCACTCCAGAAAACACGCACGGCTTTGCTGGGCATTCCCAGAGAGTCGGGGCGGAGGATATTGAATGG
TAA

Structures

Antitoxin

• AlphaFold DB: A0A411Y3T7