Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1974814..1974937 | Replicon | chromosome |
| Accession | NZ_CP033162 | ||
| Organism | Serratia sp. P2ACOL2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1974836..1974932 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1974814..1974937 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EBA31_RS09670 | 1969997..1970422 | + | 426 | WP_020826374.1 | RNA polymerase-binding protein DksA | - |
| EBA31_RS09675 | 1970595..1971548 | + | 954 | WP_020826375.1 | prolyl aminopeptidase | - |
| EBA31_RS09680 | 1971579..1971809 | - | 231 | WP_020826376.1 | DNA polymerase III subunit theta | - |
| EBA31_RS09685 | 1972181..1972699 | + | 519 | WP_020826377.1 | non-heme ferritin | - |
| EBA31_RS09690 | 1973015..1973398 | + | 384 | WP_020826378.1 | CopC domain-containing protein YobA | - |
| EBA31_RS09695 | 1973402..1974283 | + | 882 | WP_122078616.1 | copper homeostasis membrane protein CopD | - |
| EBA31_RS09700 | 1974353..1974694 | + | 342 | WP_020826380.1 | YebY family protein | - |
| - | 1974814..1974937 | - | 124 | - | - | Antitoxin |
| - | 1974836..1974932 | + | 97 | - | - | Toxin |
| EBA31_RS09705 | 1975193..1975759 | - | 567 | WP_122078618.1 | DUF4136 domain-containing protein | - |
| EBA31_RS09710 | 1976035..1976385 | + | 351 | WP_041415315.1 | DUF4377 domain-containing protein | - |
| EBA31_RS09715 | 1976429..1977277 | - | 849 | WP_122080604.1 | aminoglycoside phosphotransferase family protein | - |
| EBA31_RS09720 | 1977489..1978688 | + | 1200 | WP_020826387.1 | trans-2-enoyl-CoA reductase family protein | - |
| EBA31_RS09725 | 1978831..1979394 | + | 564 | WP_046373855.1 | DUF2975 domain-containing protein | - |
| EBA31_RS09730 | 1979369..1979617 | + | 249 | WP_202914199.1 | helix-turn-helix transcriptional regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T113294 NZ_CP033162:1974836-1974932 [Serratia sp. P2ACOL2]
AACAAGCCTTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCTTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 124 bp
>AT113294 NZ_CP033162:c1974937-1974814 [Serratia sp. P2ACOL2]
AACACAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTTTGTGCAAGGCTTGTTCAGCCATGCACTTTAAGAGTAG
AACACAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTTTGTGCAAGGCTTGTTCAGCCATGCACTTTAAGAGTAG
