Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 348195..348466 | Replicon | chromosome |
| Accession | NZ_CP033158 | ||
| Organism | Escherichia coli strain CM IVRI KOL-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 348233..348336 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 348195..348466 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EAF06_RS01655 | 345352..346791 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EAF06_RS01660 | 346909..347145 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EAF06_RS01665 | 347250..347441 | + | 192 | WP_000457842.1 | YebW family protein | - |
| EAF06_RS01670 | 347442..348098 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 348195..348466 | + | 272 | - | - | Antitoxin |
| - | 348233..348336 | - | 104 | - | - | Toxin |
| EAF06_RS01675 | 348494..348835 | - | 342 | WP_000976476.1 | YebY family protein | - |
| EAF06_RS01680 | 348848..349719 | - | 872 | Protein_333 | copper homeostasis membrane protein CopD | - |
| EAF06_RS01685 | 349723..350097 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EAF06_RS01690 | 350236..350466 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EAF06_RS01695 | 350568..351224 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EAF06_RS01700 | 351248..351910 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T113253 NZ_CP033158:c348336-348233 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT113253 NZ_CP033158:348195-348466 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
