113166

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 849336..849990 Replicon chromosome
Accession NZ_CP033106
Organism Pantoea sp. 201603H

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag EAE31_RS03820 Protein ID WP_128178191.1
Coordinates 849583..849990 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag EAE31_RS03815 Protein ID WP_128178189.1
Coordinates 849336..849602 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EAE31_RS03795 844507..846018 - 1512 WP_128178182.1 PTS transporter subunit EIIC -
EAE31_RS03800 846377..847108 - 732 WP_128178184.1 MurR/RpiR family transcriptional regulator -
EAE31_RS03805 847432..848085 + 654 WP_128178186.1 hemolysin III family protein -
EAE31_RS03810 848125..849105 - 981 WP_128178187.1 tRNA-modifying protein YgfZ -
EAE31_RS03815 849336..849602 + 267 WP_128178189.1 FAD assembly factor SdhE Antitoxin
EAE31_RS03820 849583..849990 + 408 WP_128178191.1 hypothetical protein Toxin
EAE31_RS03825 850039..850557 - 519 WP_128178193.1 flavodoxin FldB -
EAE31_RS03830 850754..851647 + 894 WP_128178195.1 site-specific tyrosine recombinase XerD -
EAE31_RS03835 851761..852468 + 708 WP_128178197.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
EAE31_RS03840 852475..854205 + 1731 WP_154324572.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(2-129)

Antitoxin

Flavinator of succinate dehydrogenase

(8-77)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 16093.21 Da        Isoelectric Point: 11.9497

>T113166 WP_128178191.1 NZ_CP033106:849583-849990 [Pantoea sp. 201603H]
VARWQSNLRVSRCAKRVSLALHGGAILFLVLAPWPPAYIPVWVLLFLMVLECCFSLRRIERRQGEISLLAPRLLYWRQQE
WLIVRSPWISPQGILLSLRSRKGQRECLWLMRDSMSQAAWHLLRQGLLTRWYRER

Download         Length: 408 bp

>T113166 NZ_CP033106:849583-849990 [Pantoea sp. 201603H]
GTGGCCCGGTGGCAATCTAATCTGCGCGTGTCTCGCTGCGCAAAGCGCGTCTCACTGGCGCTGCATGGCGGGGCGATTCT
GTTCCTTGTACTGGCGCCCTGGCCGCCTGCTTACATTCCGGTCTGGGTGCTGTTATTTTTGATGGTGCTTGAATGTTGCT
TTAGTCTGCGGCGGATAGAACGTCGGCAGGGGGAAATTTCACTGCTGGCTCCGCGCTTATTATACTGGCGCCAGCAAGAG
TGGCTGATAGTGCGATCTCCCTGGATCTCACCGCAGGGCATTTTACTATCGCTGCGAAGCAGAAAAGGCCAACGTGAATG
CCTCTGGCTAATGCGGGATAGCATGAGTCAAGCTGCCTGGCATTTGTTGCGGCAGGGGCTGCTGACCCGATGGTATCGTG
AACGCTGA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10569.06 Da        Isoelectric Point: 4.8310

>AT113166 WP_128178189.1 NZ_CP033106:849336-849602 [Pantoea sp. 201603H]
MDINNRSRIHWACRRGMRELDISIMPFFEYEYDSLSDDDKQVFIRLLESDDPDLFNWMMNHGEPADPELKRMVQLIQIRN
KQRGPVAI

Download         Length: 267 bp

>AT113166 NZ_CP033106:849336-849602 [Pantoea sp. 201603H]
ATGGATATAAATAACCGATCACGTATTCACTGGGCATGTCGACGCGGAATGCGCGAACTGGACATCTCAATTATGCCTTT
CTTCGAATATGAATATGATTCGCTTAGCGATGATGATAAGCAGGTATTTATTCGACTACTGGAAAGCGACGATCCCGATC
TCTTCAACTGGATGATGAATCACGGCGAACCAGCCGACCCTGAGCTGAAGCGAATGGTCCAGCTTATTCAAATAAGAAAT
AAACAGCGTGGCCCGGTGGCAATCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References