Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1960261..1960532 | Replicon | chromosome |
| Accession | NZ_CP033096 | ||
| Organism | Escherichia coli strain CP53 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1960391..1960494 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1960261..1960532 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EAH50_RS11700 | 1956816..1957478 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EAH50_RS11705 | 1957502..1958158 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EAH50_RS11710 | 1958260..1958490 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EAH50_RS11715 | 1958629..1959003 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| EAH50_RS11720 | 1959007..1959879 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| EAH50_RS11725 | 1959892..1960233 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1960261..1960532 | - | 272 | - | - | Antitoxin |
| - | 1960391..1960494 | + | 104 | - | - | Toxin |
| EAH50_RS11730 | 1960629..1961285 | + | 657 | WP_096178143.1 | protein-serine/threonine phosphatase | - |
| EAH50_RS11735 | 1961286..1961477 | - | 192 | WP_001338167.1 | YebW family protein | - |
| EAH50_RS11740 | 1961582..1961818 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| EAH50_RS11745 | 1961936..1963375 | - | 1440 | WP_024238487.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T113117 NZ_CP033096:1960391-1960494 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT113117 NZ_CP033096:c1960532-1960261 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
