Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2177180..2177448 | Replicon | chromosome |
| Accession | NZ_CP033092 | ||
| Organism | Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2177308..2177410 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2177180..2177448 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EAS44_RS11515 | 2173734..2174396 | - | 663 | Protein_2057 | exodeoxyribonuclease X | - |
| EAS44_RS11520 | 2174419..2175075 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| EAS44_RS11525 | 2175177..2175407 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EAS44_RS11530 | 2175546..2175920 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EAS44_RS11535 | 2175924..2176796 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| EAS44_RS11540 | 2176809..2177150 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2177180..2177448 | - | 269 | - | - | Antitoxin |
| - | 2177308..2177410 | + | 103 | - | - | Toxin |
| EAS44_RS11545 | 2177545..2178201 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| EAS44_RS11550 | 2178202..2178393 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EAS44_RS11555 | 2178498..2178734 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EAS44_RS11560 | 2178852..2180291 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T113086 NZ_CP033092:2177308-2177410 [Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT113086 NZ_CP033092:c2177448-2177180 [Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
