Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2006819..2006914 Replicon chromosome
Accession NZ_CP033055
Organism Serratia sp. 3ACOL1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2006819..2006914 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2006819..2006905 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D9980_RS09210 2001995..2002867 - 873 WP_121607103.1 excinuclease Cho -
D9980_RS09215 2003299..2005458 - 2160 WP_162304249.1 hypothetical protein -
D9980_RS09220 2005467..2006312 - 846 WP_121607105.1 phage repressor protein CI -
D9980_RS09225 2006426..2006641 + 216 WP_121607106.1 hypothetical protein -
- 2006819..2006905 + 87 - - Antitoxin
- 2006819..2006914 - 96 - - Toxin
D9980_RS09240 2007055..2007396 - 342 WP_021806756.1 YebY family protein -
D9980_RS09245 2007466..2008347 - 882 WP_121607108.1 copper homeostasis membrane protein CopD -
D9980_RS09250 2008351..2008734 - 384 WP_021181056.1 CopC domain-containing protein YobA -
D9980_RS09255 2009174..2009692 - 519 WP_024485864.1 non-heme ferritin -
D9980_RS09260 2010081..2010311 + 231 WP_021181054.1 DNA polymerase III subunit theta -
D9980_RS09265 2010449..2011438 - 990 WP_121607109.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 96 bp

>T113001 NZ_CP033055:c2006914-2006819 [Serratia sp. 3ACOL1]
AACAAACCTTGCATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCCTTTCCCTAGACCGAGTATAGGAATCG
TACTCGGTCTTTTTTT

Antitoxin


Download         Length: 87 bp

>AT113001 NZ_CP033055:2006819-2006905 [Serratia sp. 3ACOL1]
AAAAAAAGACCGAGTACGATTCCTATACTCGGTCTAGGGAAAGGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTATGCA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References