Detailed information of TA system TA112979

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VagC
• Location: 4923..5554
• Replicon: plasmid pAtA6
• Accession: NZ_CP033029
• Organism: Agrobacterium tumefaciens strain A6

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: AtA6_RS23675
• Protein ID: WP_038496209.1
• Coordinates: 4923..5324 (-)
• Length: 134 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: -
• Locus tag: AtA6_RS23680
• Protein ID: WP_003519381.1
• Coordinates: 5324..5554 (-)
• Length: 77 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
AtA6_RS23645	25..1308	+	1284	WP_025591772.1	plasmid partitioning protein RepA	-
AtA6_RS23650	1305..2330	+	1026	WP_038496201.1	plasmid partitioning protein RepB	-
AtA6_RS23655	2533..3747	+	1215	WP_038496203.1	replication initiation protein RepC	-
AtA6_RS23665	3957..4250	-	294	WP_038496206.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	-
AtA6_RS23670	4629..4847	+	219	WP_038497375.1	BrnA antitoxin family protein	-
AtA6_RS23675	4923..5324	-	402	WP_038496209.1	tRNA(fMet)-specific endonuclease VapC	Toxin
AtA6_RS23680	5324..5554	-	231	WP_003519381.1	antitoxin	Antitoxin
AtA6_RS23690	6339..6479	-	141	WP_003518781.1	hypothetical protein	-
AtA6_RS23695	6850..7620	-	771	WP_038496212.1	4-hydroxy-2-oxoheptanedioate aldolase	-
AtA6_RS23700	7628..8410	-	783	WP_038496215.1	2-oxo-hepta-3-ene-1,7-dioic acid hydratase	-
AtA6_RS23705	8430..9323	-	894	WP_038496218.1	intradiol ring-cleavage dioxygenase	-
AtA6_RS23710	9569..10303	+	735	WP_038496221.1	GntR family transcriptional regulator	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Non-Mobilizable plasmid	-	-	1..815853	815853

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-118)

Antitoxin

• Type II toxin-antitoxin system, antitoxin Phd/YefM (3-58)

Sequences

Toxin

Protein

• Length: 134 a.a.
• Molecular weight: 19739.68 Da
• Isoelectric Point: 5.5500

>T112979 WP_038496209.1 NZ_CP033029:c5324-4923 [Agrobacterium tumefaciens]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF

Nucleotide

• Length: 402 bp

>T112979 NZ_CP033029:c5324-4923 [Agrobacterium tumefaciens]
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Antitoxin

Protein

• Length: 77 a.a.
• Molecular weight: 11350.61 Da
• Isoelectric Point: 5.5500

>AT112979 WP_003519381.1 NZ_CP033029:c5554-5324 [Agrobacterium tumefaciens]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF

Nucleotide

• Length: 231 bp

>AT112979 NZ_CP033029:c5554-5324 [Agrobacterium tumefaciens]
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