Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2199395..2199666 | Replicon | chromosome |
| Accession | NZ_CP032989 | ||
| Organism | Escherichia coli strain W2-5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2199525..2199628 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2199395..2199666 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D9V55_RS11085 | 2195949..2196611 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| D9V55_RS11090 | 2196635..2197292 | - | 658 | Protein_2071 | carbon-nitrogen hydrolase family protein | - |
| D9V55_RS11095 | 2197394..2197624 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| D9V55_RS11100 | 2197763..2198137 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| D9V55_RS11105 | 2198141..2199013 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| D9V55_RS11110 | 2199026..2199367 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2199395..2199666 | - | 272 | - | - | Antitoxin |
| - | 2199525..2199628 | + | 104 | - | - | Toxin |
| D9V55_RS11115 | 2199763..2200419 | + | 657 | WP_024258105.1 | protein-serine/threonine phosphatase | - |
| D9V55_RS11120 | 2200420..2200611 | - | 192 | WP_001296140.1 | YebW family protein | - |
| D9V55_RS11125 | 2200716..2200952 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| D9V55_RS11130 | 2201070..2202509 | - | 1440 | WP_001512833.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T112895 NZ_CP032989:2199525-2199628 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT112895 NZ_CP032989:c2199666-2199395 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
