Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 1006867..1007521 Replicon chromosome
Accession NZ_CP032989
Organism Escherichia coli strain W2-5

Toxin (Protein)


Gene name cptA Uniprot ID S1EEB2
Locus tag D9V55_RS05255 Protein ID WP_000244777.1
Coordinates 1007114..1007521 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID S1PPB1
Locus tag D9V55_RS05250 Protein ID WP_000354046.1
Coordinates 1006867..1007133 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D9V55_RS05225 1002036..1002779 + 744 WP_000951948.1 SDR family oxidoreductase -
D9V55_RS05230 1002836..1004269 - 1434 WP_001363803.1 6-phospho-beta-glucosidase BglA -
D9V55_RS05235 1004314..1004625 + 312 WP_001182954.1 N(4)-acetylcytidine aminohydrolase -
D9V55_RS05240 1004789..1005448 + 660 WP_000250274.1 hemolysin III family protein -
D9V55_RS05245 1005644..1006624 - 981 WP_000886062.1 tRNA-modifying protein YgfZ -
D9V55_RS05250 1006867..1007133 + 267 WP_000354046.1 FAD assembly factor SdhE Antitoxin
D9V55_RS05255 1007114..1007521 + 408 WP_000244777.1 toxin CptA Toxin
D9V55_RS05260 1007561..1008082 - 522 WP_023143005.1 flavodoxin FldB -
D9V55_RS05265 1008194..1009090 + 897 WP_000806638.1 site-specific tyrosine recombinase XerD -
D9V55_RS05270 1009115..1009825 + 711 WP_000715214.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
D9V55_RS05275 1009831..1011564 + 1734 WP_000813215.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 16031.96 Da        Isoelectric Point: 11.5202

>T112891 WP_000244777.1 NZ_CP032989:1007114-1007521 [Escherichia coli]
VVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQ
EWSIVKAPWMIKSGMMLRLRSDGGKRQHLWLAADSMDEAEWRDLRRILLQQETQR

Download         Length: 408 bp

>T112891 NZ_CP032989:1007114-1007521 [Escherichia coli]
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATGCCCTGGCCACTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGGCGTATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCACCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGATGGCGGTAAACGGCA
ACATTTATGGCTGGCAGCCGACAGCATGGACGAAGCTGAATGGCGGGATTTACGGCGGATTTTGTTGCAACAAGAGACGC
AAAGATAA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10547.12 Da        Isoelectric Point: 5.1599

>AT112891 WP_000354046.1 NZ_CP032989:1006867-1007133 [Escherichia coli]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRN
RERGPVAI

Download         Length: 267 bp

>AT112891 NZ_CP032989:1006867-1007133 [Escherichia coli]
ATGGACATTAATAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAACGCATCTTTATTCGTCTGCTGGAATGTGACGATCCGGACC
TGTTTAACTGGCTGATGAATCACGGTAAACCGGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9LFV7

Antitoxin

Source ID Structure
PDB 6B58
PDB 1X6I
PDB 1X6J
PDB 6C12
AlphaFold DB A0A7U9QD57

References