Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/CC2985(antitoxin)
Location 91051..91598 Replicon plasmid pAt1D1108a
Accession NZ_CP032923
Organism Agrobacterium tumefaciens strain 1D1108

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag At1D1108_RS24010 Protein ID WP_080802455.1
Coordinates 91305..91598 (+) Length 98 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag At1D1108_RS24005 Protein ID WP_080802451.1
Coordinates 91051..91305 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
At1D1108_RS23980 86788..87099 + 312 WP_080802444.1 helix-turn-helix domain-containing protein -
At1D1108_RS23985 87092..88345 + 1254 WP_080803118.1 type II toxin-antitoxin system HipA family toxin -
At1D1108_RS23990 88505..88819 - 315 WP_065689125.1 putative addiction module antidote protein -
At1D1108_RS23995 88824..89120 - 297 WP_080803121.1 type II toxin-antitoxin system RelE/ParE family toxin -
At1D1108_RS24000 89646..90855 + 1210 Protein_97 Fic family protein -
At1D1108_RS24005 91051..91305 + 255 WP_080802451.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
At1D1108_RS24010 91305..91598 + 294 WP_080802455.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
At1D1108_RS24015 91736..92668 - 933 WP_080802458.1 hypothetical protein -
At1D1108_RS24020 92575..93831 - 1257 WP_080802461.1 MSMEG_0569 family flavin-dependent oxidoreductase -
At1D1108_RS24025 93843..94121 - 279 WP_080802463.1 MSMEG_0570 family nitrogen starvation response protein -
At1D1108_RS24030 94087..95085 - 999 WP_080802466.1 sll0787 family AIR synthase-like protein -
At1D1108_RS24035 95085..95624 - 540 WP_080802469.1 GNAT family N-acetyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..502274 502274


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-85)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 12579.08 Da        Isoelectric Point: 12.7867

>T112857 WP_080802455.1 NZ_CP032923:91305-91598 [Agrobacterium tumefaciens]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKK

Download         Length: 294 bp

>T112857 NZ_CP032923:91305-91598 [Agrobacterium tumefaciens]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 10912.81 Da        Isoelectric Point: 12.7242

>AT112857 WP_080802451.1 NZ_CP032923:91051-91305 [Agrobacterium tumefaciens]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKK

Download         Length: 255 bp

>AT112857 NZ_CP032923:91051-91305 [Agrobacterium tumefaciens]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References