Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3699013..3699157 | Replicon | chromosome |
| Accession | NZ_CP032897 | ||
| Organism | Enterobacter kobei strain WCHEK045523 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3699019..3699122 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3699013..3699157 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D9T11_RS19325 | 3694153..3695595 | + | 1443 | WP_121527977.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| D9T11_RS19330 | 3695701..3695940 | + | 240 | WP_008500472.1 | YebV family protein | - |
| D9T11_RS19335 | 3695975..3696619 | - | 645 | WP_121527978.1 | protein-serine/threonine phosphatase | - |
| D9T11_RS19340 | 3696787..3697728 | + | 942 | WP_014884298.1 | VirK/YbjX family protein | - |
| D9T11_RS19345 | 3697903..3698799 | + | 897 | WP_048995793.1 | benzoate transporter | - |
| - | 3699013..3699157 | + | 145 | - | - | Antitoxin |
| - | 3699019..3699122 | - | 104 | - | - | Toxin |
| D9T11_RS19355 | 3699261..3699599 | - | 339 | WP_071922110.1 | YebY family protein | - |
| D9T11_RS19360 | 3699616..3700485 | - | 870 | WP_023330712.1 | copper homeostasis membrane protein CopD | - |
| D9T11_RS19365 | 3700487..3700858 | - | 372 | WP_032636204.1 | CopC domain-containing protein YobA | - |
| D9T11_RS19370 | 3700996..3701226 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| D9T11_RS19375 | 3701337..3701987 | + | 651 | WP_058690984.1 | carbon-nitrogen hydrolase family protein | - |
| D9T11_RS19380 | 3702012..3702674 | + | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T112798 NZ_CP032897:c3699122-3699019 [Enterobacter kobei]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT112798 NZ_CP032897:3699013-3699157 [Enterobacter kobei]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
