Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2105225..2105496 | Replicon | chromosome |
| Accession | NZ_CP032892 | ||
| Organism | Escherichia coli strain SCEC020022 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2105355..2105458 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2105225..2105496 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7V31_RS13460 | 2101780..2102442 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C7V31_RS13465 | 2102466..2103122 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C7V31_RS13470 | 2103224..2103454 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C7V31_RS13475 | 2103593..2103967 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C7V31_RS13480 | 2103971..2104843 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| C7V31_RS13485 | 2104856..2105197 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2105225..2105496 | - | 272 | - | - | Antitoxin |
| - | 2105355..2105458 | + | 104 | - | - | Toxin |
| C7V31_RS13490 | 2105593..2106249 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| C7V31_RS13495 | 2106250..2106441 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C7V31_RS13500 | 2106546..2106782 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C7V31_RS13505 | 2106900..2108339 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T112775 NZ_CP032892:2105355-2105458 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT112775 NZ_CP032892:c2105496-2105225 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
