Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 676025..676296 | Replicon | chromosome |
| Accession | NZ_CP032879 | ||
| Organism | Escherichia coli strain WCHEC000837 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 676063..676166 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 676025..676296 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D9N32_RS05285 | 673182..674621 | + | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| D9N32_RS05290 | 674739..674975 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| D9N32_RS05295 | 675080..675271 | + | 192 | WP_001296140.1 | YebW family protein | - |
| D9N32_RS05300 | 675272..675928 | - | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| - | 676025..676296 | + | 272 | - | - | Antitoxin |
| - | 676063..676166 | - | 104 | - | - | Toxin |
| D9N32_RS05305 | 676324..676665 | - | 342 | WP_001520705.1 | YebY family protein | - |
| D9N32_RS05310 | 676678..677550 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| D9N32_RS05315 | 677554..677928 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| D9N32_RS05320 | 678067..678297 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| D9N32_RS05325 | 678399..679055 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| D9N32_RS05330 | 679079..679741 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T112724 NZ_CP032879:c676166-676063 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT112724 NZ_CP032879:676025-676296 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
