Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1851852..1852061 | Replicon | chromosome |
| Accession | NZ_CP032841 | ||
| Organism | Enterobacter hormaechei strain C15117 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1851945..1852048 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1851852..1852061 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8M16_RS08945 | 1848390..1849052 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| D8M16_RS08950 | 1849077..1849727 | - | 651 | WP_062933476.1 | carbon-nitrogen hydrolase family protein | - |
| D8M16_RS08955 | 1849839..1850069 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| D8M16_RS08960 | 1850207..1850578 | + | 372 | WP_121478814.1 | CopC domain-containing protein YobA | - |
| D8M16_RS08965 | 1850580..1851449 | + | 870 | WP_121478815.1 | copper homeostasis membrane protein CopD | - |
| D8M16_RS08970 | 1851466..1851804 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 1851852..1852061 | - | 210 | - | - | Antitoxin |
| D8M16_RS08975 | 1851929..1852126 | - | 198 | WP_072047899.1 | hypothetical protein | - |
| - | 1851945..1852048 | + | 104 | - | - | Toxin |
| D8M16_RS08980 | 1852172..1853152 | - | 981 | WP_047051764.1 | VirK/YbjX family protein | - |
| D8M16_RS08985 | 1853320..1853964 | + | 645 | WP_121478816.1 | protein-serine/threonine phosphatase | - |
| D8M16_RS08990 | 1853999..1854238 | - | 240 | WP_006811010.1 | YebV family protein | - |
| D8M16_RS08995 | 1854344..1855807 | - | 1464 | WP_121478817.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T112663 NZ_CP032841:1851945-1852048 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT112663 NZ_CP032841:c1852061-1851852 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
