Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1770038..1770183 | Replicon | chromosome |
| Accession | NZ_CP032833 | ||
| Organism | Klebsiella pneumoniae strain INF237 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1770074..1770176 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1770038..1770183 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D9K64_RS09005 | 1765168..1767228 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| D9K64_RS09010 | 1767232..1767891 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| D9K64_RS09015 | 1767970..1768200 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| D9K64_RS09020 | 1768313..1768687 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| D9K64_RS09025 | 1768691..1769560 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| D9K64_RS09030 | 1769577..1769915 | + | 339 | WP_040173945.1 | YebY family protein | - |
| - | 1770038..1770183 | - | 146 | - | - | Antitoxin |
| - | 1770074..1770176 | + | 103 | - | - | Toxin |
| D9K64_RS28845 | 1770551..1770694 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| D9K64_RS09040 | 1770799..1771767 | - | 969 | WP_073971961.1 | DUF535 family protein | - |
| D9K64_RS09045 | 1771924..1772558 | + | 635 | Protein_1742 | protein-serine/threonine phosphatase | - |
| D9K64_RS09050 | 1772555..1772746 | - | 192 | WP_002911395.1 | YebW family protein | - |
| D9K64_RS09055 | 1772844..1773071 | - | 228 | WP_040173947.1 | YebV family protein | - |
| D9K64_RS09060 | 1773187..1774620 | - | 1434 | WP_121096877.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T112632 NZ_CP032833:1770074-1770176 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT112632 NZ_CP032833:c1770183-1770038 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
