Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2295539..2295773 | Replicon | chromosome |
| Accession | NZ_CP032811 | ||
| Organism | Escherichia coli strain ERL03-1416 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2295669..2295772 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2295539..2295773 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8Z67_RS11720 | 2292094..2292756 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| D8Z67_RS11725 | 2292780..2293436 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| D8Z67_RS11730 | 2293538..2293768 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| D8Z67_RS11735 | 2293907..2294281 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| D8Z67_RS11740 | 2294285..2295157 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| D8Z67_RS11745 | 2295170..2295511 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2295539..2295773 | - | 235 | - | - | Antitoxin |
| - | 2295669..2295772 | + | 104 | - | - | Toxin |
| D8Z67_RS11750 | 2295904..2296980 | - | 1077 | WP_045893699.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| D8Z67_RS11755 | 2296946..2297227 | - | 282 | WP_001311878.1 | excisionase | - |
| D8Z67_RS11760 | 2297334..2297522 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 2297338..2297516 | + | 179 | NuclAT_0 | - | - |
| - | 2297338..2297516 | + | 179 | NuclAT_0 | - | - |
| - | 2297338..2297516 | + | 179 | NuclAT_0 | - | - |
| - | 2297338..2297516 | + | 179 | NuclAT_0 | - | - |
| D8Z67_RS11765 | 2297515..2297709 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| D8Z67_RS11770 | 2297766..2298575 | - | 810 | WP_000166313.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2275459..2357017 | 81558 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T112553 NZ_CP032811:2295669-2295772 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT112553 NZ_CP032811:c2295773-2295539 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
