Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) paaR-paaA-parE/-
Location 3644636..3645114 Replicon chromosome
Accession NZ_CP032808
Organism Escherichia coli strain ERL04-3476

Toxin (Protein)


Gene name parE_1 Uniprot ID A0A891SFN9
Locus tag D8Z68_RS19340 Protein ID WP_001303876.1
Coordinates 3644827..3645114 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name paaA Uniprot ID Q8XD67
Locus tag D8Z68_RS19335 Protein ID WP_000536233.1
Coordinates 3644636..3644827 (+) Length 64 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D8Z68_RS19300 3640040..3640810 - 771 WP_000450992.1 DUF1627 domain-containing protein -
D8Z68_RS19305 3640832..3641578 - 747 WP_000788751.1 ATP-binding protein -
D8Z68_RS19310 3641585..3642676 - 1092 WP_001205823.1 hypothetical protein -
D8Z68_RS19315 3642755..3643210 + 456 WP_000273724.1 hypothetical protein -
D8Z68_RS19320 3643417..3643842 - 426 WP_000693855.1 Rha family transcriptional regulator -
D8Z68_RS19325 3643826..3644098 - 273 WP_000887453.1 helix-turn-helix domain-containing protein -
D8Z68_RS19330 3644207..3644608 + 402 WP_000986592.1 helix-turn-helix domain-containing protein -
D8Z68_RS19335 3644636..3644827 + 192 WP_000536233.1 hypothetical protein Antitoxin
D8Z68_RS19340 3644827..3645114 + 288 WP_001303876.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
D8Z68_RS19350 3645392..3645547 + 156 WP_000379575.1 DUF1391 family protein -
D8Z68_RS19360 3647002..3647391 + 390 WP_000394511.1 hypothetical protein -
D8Z68_RS19365 3647578..3647763 - 186 WP_001133046.1 hypothetical protein -
D8Z68_RS19375 3648337..3648525 + 189 WP_000413705.1 cell division inhibition protein DicB -
D8Z68_RS19380 3648522..3648713 + 192 WP_001098307.1 DUF1482 family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-91)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 10978.84 Da        Isoelectric Point: 10.1360

>T112528 WP_001303876.1 NZ_CP032808:3644827-3645114 [Escherichia coli]
MLPILWLPSARDDLRQIITYIAKENPPAARRLKIRIETSVLPLSEHPYLYPPSERVSGLREIVTHPNYIILYRVAASSIE
IVSVTHSRRQFPFSI

Download         Length: 288 bp

>T112528 NZ_CP032808:3644827-3645114 [Escherichia coli]
ATGTTACCCATTTTATGGCTACCGTCTGCTCGCGATGATTTGCGCCAGATCATAACTTACATCGCCAAGGAGAACCCACC
GGCAGCACGTAGACTAAAAATACGCATTGAAACATCGGTATTACCTCTATCTGAGCATCCGTACTTATATCCACCAAGCG
AACGGGTTTCTGGATTGAGAGAGATCGTGACCCACCCTAACTACATAATCCTGTACAGAGTAGCTGCTTCAAGCATTGAG
ATTGTAAGCGTGACACATTCTCGGCGACAATTTCCCTTCTCTATCTGA

Antitoxin


Download         Length: 64 a.a.        Molecular weight: 7025.80 Da        Isoelectric Point: 4.0270

>AT112528 WP_000536233.1 NZ_CP032808:3644636-3644827 [Escherichia coli]
MGTALSPIVSEFETTEQENSYNEWLRTKVTSSLADTRPAIPHDEVMAEMENLIAQIAVTNKSE

Download         Length: 192 bp

>AT112528 NZ_CP032808:3644636-3644827 [Escherichia coli]
ATGGGTACAGCCCTTTCTCCGATAGTTTCAGAATTCGAAACTACCGAACAAGAAAACAGTTACAACGAATGGTTGCGCAC
TAAAGTAACGTCAAGCCTTGCAGACACTCGCCCCGCAATTCCACATGACGAGGTAATGGCTGAAATGGAAAATCTTATTG
CTCAAATTGCTGTAACTAACAAGAGCGAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References