Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/-
Location 360701..361332 Replicon chromosome
Accession NZ_CP032808
Organism Escherichia coli strain ERL04-3476

Toxin (Protein)


Gene name hicA Uniprot ID U9Y2A7
Locus tag D8Z68_RS01705 Protein ID WP_001259385.1
Coordinates 360701..360976 (+) Length 92 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID U9Y7E1
Locus tag D8Z68_RS01710 Protein ID WP_000593555.1
Coordinates 360973..361332 (+) Length 120 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D8Z68_RS01690 355705..356772 + 1068 WP_000361458.1 HlyD family secretion protein -
D8Z68_RS01695 356769..359504 + 2736 WP_000149107.1 ribosome-associated ATPase/putative transporter RbbA -
D8Z68_RS01700 359504..360628 + 1125 WP_001301659.1 ABC transporter permease -
D8Z68_RS01705 360701..360976 + 276 WP_001259385.1 type II toxin-antitoxin system HicA family toxin Toxin
D8Z68_RS01710 360973..361332 + 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin Antitoxin
D8Z68_RS01715 361382..362242 - 861 WP_001131788.1 class II aldolase -
D8Z68_RS01720 362274..362543 - 270 WP_000933060.1 HPr family phosphocarrier protein -
D8Z68_RS01725 362533..364041 - 1509 WP_001301773.1 carbohydrate kinase -
D8Z68_RS01730 364034..365392 - 1359 WP_001302220.1 PTS galactitol transporter subunit IIC -
D8Z68_RS01735 365469..365750 - 282 WP_000084025.1 PTS sugar transporter subunit IIB -
D8Z68_RS01740 365747..366220 - 474 WP_001161553.1 PTS sugar transporter subunit IIA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(30-80)

Antitoxin

Uncharacterised protein family HicB

(60-112)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10199.94 Da        Isoelectric Point: 10.7076

>T112503 WP_001259385.1 NZ_CP032808:360701-360976 [Escherichia coli]
MRTKVQALRKKQKNTLDQIFKTPVPQGIKWSDIESLVKALGGEIKEGRGSRCKFILNMSVACFHRPHPSPDTDKGAVESV
RDWLLSIGVKP

Download         Length: 276 bp

>T112503 NZ_CP032808:360701-360976 [Escherichia coli]
ATGAGAACCAAGGTACAGGCTTTACGGAAGAAACAAAAAAATACATTGGATCAAATATTTAAAACTCCTGTTCCTCAAGG
GATCAAGTGGTCTGATATAGAGTCACTGGTTAAAGCATTAGGCGGAGAAATTAAGGAAGGAAGAGGTTCGCGTTGTAAGT
TCATACTAAATATGAGCGTTGCGTGTTTCCATCGGCCTCATCCGTCGCCAGATACCGATAAAGGCGCTGTAGAAAGCGTG
CGTGACTGGTTACTAAGTATAGGGGTAAAACCATGA

Antitoxin


Download         Length: 120 a.a.        Molecular weight: 13402.27 Da        Isoelectric Point: 5.1987

>AT112503 WP_000593555.1 NZ_CP032808:360973-361332 [Escherichia coli]
MIKLKTPNSMEIAGQPAVITYVPELNAFRGKFLGLSGYCDFVSDSIQGLQKEGELSLREYLEDCKAAGIEPYARTEKIKT
FTLRYPESLSERLNNAAAQQQVSVNTYIIETLNERLNHL

Download         Length: 360 bp

>AT112503 NZ_CP032808:360973-361332 [Escherichia coli]
ATGATCAAACTGAAGACGCCAAACTCTATGGAGATTGCCGGGCAACCTGCTGTTATCACTTACGTGCCAGAACTGAATGC
ATTTCGTGGCAAATTCCTGGGCTTGTCAGGTTATTGTGATTTTGTCTCTGACAGCATTCAGGGGCTGCAAAAAGAAGGGG
AACTTTCCCTGCGAGAGTATCTTGAGGATTGTAAAGCTGCGGGTATTGAGCCGTATGCGCGTACAGAAAAGATTAAGACC
TTTACGTTACGCTATCCAGAATCGCTGAGTGAACGCCTTAATAATGCGGCTGCGCAGCAACAAGTCTCTGTTAATACCTA
TATTATTGAAACACTGAATGAGCGTTTGAATCATTTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A4P7TTW8

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9LKZ6

References