Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) paaR-paaA-parE/-
Location 3627667..3628145 Replicon chromosome
Accession NZ_CP032803
Organism Escherichia coli strain ERL05-1306

Toxin (Protein)


Gene name parE_1 Uniprot ID A0A891SFN9
Locus tag D8Z70_RS19290 Protein ID WP_001303876.1
Coordinates 3627858..3628145 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name paaA Uniprot ID Q8XD67
Locus tag D8Z70_RS19285 Protein ID WP_000536233.1
Coordinates 3627667..3627858 (+) Length 64 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D8Z70_RS19250 3623071..3623841 - 771 WP_000450992.1 DUF1627 domain-containing protein -
D8Z70_RS19255 3623863..3624609 - 747 WP_000788751.1 ATP-binding protein -
D8Z70_RS19260 3624616..3625707 - 1092 WP_001205823.1 hypothetical protein -
D8Z70_RS19265 3625786..3626241 + 456 WP_000273724.1 hypothetical protein -
D8Z70_RS19270 3626448..3626873 - 426 WP_000693855.1 Rha family transcriptional regulator -
D8Z70_RS19275 3626857..3627129 - 273 WP_000887453.1 helix-turn-helix domain-containing protein -
D8Z70_RS19280 3627238..3627639 + 402 WP_000986592.1 helix-turn-helix domain-containing protein -
D8Z70_RS19285 3627667..3627858 + 192 WP_000536233.1 hypothetical protein Antitoxin
D8Z70_RS19290 3627858..3628145 + 288 WP_001303876.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
D8Z70_RS19300 3628423..3628578 + 156 WP_000379575.1 DUF1391 family protein -
D8Z70_RS19305 3628720..3629109 + 390 WP_000394511.1 hypothetical protein -
D8Z70_RS19310 3629296..3629481 - 186 WP_001133046.1 hypothetical protein -
D8Z70_RS19320 3630055..3630243 + 189 WP_000413705.1 cell division inhibition protein DicB -
D8Z70_RS19325 3630240..3630431 + 192 WP_001098307.1 DUF1482 family protein -
D8Z70_RS19330 3630525..3632996 + 2472 WP_103656106.1 exonuclease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-91)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 10978.84 Da        Isoelectric Point: 10.1360

>T112459 WP_001303876.1 NZ_CP032803:3627858-3628145 [Escherichia coli]
MLPILWLPSARDDLRQIITYIAKENPPAARRLKIRIETSVLPLSEHPYLYPPSERVSGLREIVTHPNYIILYRVAASSIE
IVSVTHSRRQFPFSI

Download         Length: 288 bp

>T112459 NZ_CP032803:3627858-3628145 [Escherichia coli]
ATGTTACCCATTTTATGGCTACCGTCTGCTCGCGATGATTTGCGCCAGATCATAACTTACATCGCCAAGGAGAACCCACC
GGCAGCACGTAGACTAAAAATACGCATTGAAACATCGGTATTACCTCTATCTGAGCATCCGTACTTATATCCACCAAGCG
AACGGGTTTCTGGATTGAGAGAGATCGTGACCCACCCTAACTACATAATCCTGTACAGAGTAGCTGCTTCAAGCATTGAG
ATTGTAAGCGTGACACATTCTCGGCGACAATTTCCCTTCTCTATCTGA

Antitoxin


Download         Length: 64 a.a.        Molecular weight: 7025.80 Da        Isoelectric Point: 4.0270

>AT112459 WP_000536233.1 NZ_CP032803:3627667-3627858 [Escherichia coli]
MGTALSPIVSEFETTEQENSYNEWLRTKVTSSLADTRPAIPHDEVMAEMENLIAQIAVTNKSE

Download         Length: 192 bp

>AT112459 NZ_CP032803:3627667-3627858 [Escherichia coli]
ATGGGTACAGCCCTTTCTCCGATAGTTTCAGAATTCGAAACTACCGAACAAGAAAACAGTTACAACGAATGGTTGCGCAC
TAAAGTAACGTCAAGCCTTGCAGACACTCGCCCCGCAATTCCACATGACGAGGTAATGGCTGAAATGGAAAATCTTATTG
CTCAAATTGCTGTAACTAACAAGAGCGAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References