Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2338962..2339233 | Replicon | chromosome |
| Accession | NZ_CP032803 | ||
| Organism | Escherichia coli strain ERL05-1306 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2339092..2339195 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2338962..2339233 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8Z70_RS12100 | 2335517..2336179 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| D8Z70_RS12105 | 2336203..2336859 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| D8Z70_RS12110 | 2336961..2337191 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| D8Z70_RS12115 | 2337330..2337704 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| D8Z70_RS12120 | 2337708..2338580 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| D8Z70_RS12125 | 2338593..2338934 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2338962..2339233 | - | 272 | - | - | Antitoxin |
| - | 2339092..2339195 | + | 104 | - | - | Toxin |
| D8Z70_RS12130 | 2339330..2339986 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| D8Z70_RS12135 | 2339987..2340178 | - | 192 | WP_001296140.1 | YebW family protein | - |
| D8Z70_RS12140 | 2340283..2340519 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| D8Z70_RS12145 | 2340637..2342076 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T112442 NZ_CP032803:2339092-2339195 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT112442 NZ_CP032803:c2339233-2338962 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
