Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2285983..2286217 | Replicon | chromosome |
| Accession | NZ_CP032801 | ||
| Organism | Escherichia coli strain ERL06-2442 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2286113..2286216 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2285983..2286217 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8Z71_RS11685 | 2282538..2283200 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| D8Z71_RS11690 | 2283224..2283880 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| D8Z71_RS11695 | 2283982..2284212 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| D8Z71_RS11700 | 2284351..2284725 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| D8Z71_RS11705 | 2284729..2285601 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| D8Z71_RS11710 | 2285614..2285955 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2285983..2286217 | - | 235 | - | - | Antitoxin |
| - | 2286113..2286216 | + | 104 | - | - | Toxin |
| D8Z71_RS11715 | 2286348..2287424 | - | 1077 | WP_045893699.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| D8Z71_RS11720 | 2287390..2287671 | - | 282 | WP_001311878.1 | excisionase | - |
| D8Z71_RS11725 | 2287778..2287966 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 2287782..2287960 | + | 179 | NuclAT_0 | - | - |
| - | 2287782..2287960 | + | 179 | NuclAT_0 | - | - |
| - | 2287782..2287960 | + | 179 | NuclAT_0 | - | - |
| - | 2287782..2287960 | + | 179 | NuclAT_0 | - | - |
| D8Z71_RS11730 | 2287959..2288153 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| D8Z71_RS11735 | 2288210..2289019 | - | 810 | WP_000166313.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2265903..2347464 | 81561 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T112406 NZ_CP032801:2286113-2286216 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT112406 NZ_CP032801:c2286217-2285983 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
