Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3093307..3093578 | Replicon | chromosome |
| Accession | NZ_CP032797 | ||
| Organism | Escherichia coli strain ERL06-2497 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3093345..3093448 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3093307..3093578 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8Z72_RS16180 | 3090464..3091903 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| D8Z72_RS16185 | 3092021..3092257 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| D8Z72_RS16190 | 3092362..3092553 | + | 192 | WP_001296140.1 | YebW family protein | - |
| D8Z72_RS16195 | 3092554..3093210 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 3093307..3093578 | + | 272 | - | - | Antitoxin |
| - | 3093345..3093448 | - | 104 | - | - | Toxin |
| D8Z72_RS16200 | 3093606..3093947 | - | 342 | WP_000976483.1 | YebY family protein | - |
| D8Z72_RS16205 | 3093960..3094832 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| D8Z72_RS16210 | 3094836..3095210 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| D8Z72_RS16215 | 3095349..3095579 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| D8Z72_RS16220 | 3095681..3096337 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| D8Z72_RS16225 | 3096361..3097023 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T112372 NZ_CP032797:c3093448-3093345 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT112372 NZ_CP032797:3093307-3093578 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
