Detailed information of TA system TA112245

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): ccdAB/CcdA(antitoxin)
• Location: 4667071..4667621
• Replicon: chromosome
• Accession: NZ_CP032789
• Organism: Escherichia coli strain NZRM4169

Toxin (Protein)

• Gene name: ccdB
• Uniprot ID: D3H432
• Locus tag: D8Z76_RS24105
• Protein ID: WP_001160975.1
• Coordinates: 4667071..4667385 (-)
• Length: 105 a.a.

Antitoxin (Protein)

• Gene name: ccdA
• Uniprot ID: V0VEX8
• Locus tag: D8Z76_RS24110
• Protein ID: WP_000125566.1
• Coordinates: 4667388..4667621 (-)
• Length: 78 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
D8Z76_RS24080	4662746..4664032	+	1287	WP_000800457.1	peptidylprolyl isomerase SurA	-
D8Z76_RS24085	4664032..4665021	+	990	WP_000241259.1	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	-
D8Z76_RS24090	4665018..4665839	+	822	WP_001065380.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	-
D8Z76_RS24095	4665842..4666219	+	378	WP_000610901.1	Co2+/Mg2+ efflux protein ApaG	-
D8Z76_RS24100	4666226..4667074	+	849	WP_000257187.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH	-
D8Z76_RS24105	4667071..4667385	-	315	WP_001160975.1	CcdB family protein	Toxin
D8Z76_RS24110	4667388..4667621	-	234	WP_000125566.1	type II toxin-antitoxin system CcdA family antitoxin	Antitoxin
D8Z76_RS24115	4667707..4668186	-	480	WP_000624372.1	type 3 dihydrofolate reductase	-
D8Z76_RS24120	4668378..4670240	-	1863	WP_000377184.1	glutathione-regulated potassium-efflux system protein KefC	-
D8Z76_RS24125	4670233..4670763	-	531	WP_000600700.1	glutathione-regulated potassium-efflux system oxidoreductase KefF	-
D8Z76_RS24130	4670871..4672202	-	1332	WP_001183178.1	MFS transporter	-
D8Z76_RS24135	4672260..4672547	-	288	WP_000203741.1	ferredoxin-like protein FixX	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin CcdB (2-103)

Antitoxin

• Post-segregation antitoxin CcdA (8-77)

Sequences

Toxin

Protein

• Length: 105 a.a.
• Molecular weight: 11711.76 Da
• Isoelectric Point: 9.8517

>T112245 WP_001160975.1 NZ_CP032789:c4667385-4667071 [Escherichia coli]
MQFTVYRSRSRNAAFPFVIDVTSDIIGVINRRIVIPLTPIERFSRIRPPERLNPILLLVDGKEYVLMTHETATVPVNALG
TKFCDASAHRTLIKGALDFMLDGI

Nucleotide

• Length: 315 bp

>T112245 NZ_CP032789:c4667385-4667071 [Escherichia coli]
ATGCAATTTACGGTATACCGCAGTCGCAGCAGGAACGCCGCGTTTCCCTTTGTTATCGATGTTACCAGCGACATTATTGG
TGTGATTAATCGCCGTATTGTTATTCCATTAACACCTATTGAACGATTTAGCCGTATTCGCCCACCAGAACGGCTTAACC
CAATCCTTTTACTGGTAGACGGCAAAGAATATGTGCTCATGACGCATGAGACTGCAACTGTTCCAGTTAACGCGCTGGGA
ACGAAATTTTGCGATGCCAGCGCGCACCGAACGTTGATTAAAGGAGCATTAGATTTTATGCTCGACGGGATTTAA

Antitoxin

Protein

• Length: 78 a.a.
• Molecular weight: 8530.53 Da
• Isoelectric Point: 5.8062

>AT112245 WP_000125566.1 NZ_CP032789:c4667621-4667388 [Escherichia coli]
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF

Nucleotide

• Length: 234 bp

>AT112245 NZ_CP032789:c4667621-4667388 [Escherichia coli]
ATGACTGCAAAACGTACCACACAAAGTGTGACCGTCACCGTCGACCGTGAGTTAGTCAATCGCGCTCGTGATGCAGGCTT
AAATATGAGCGCCACCCTTACGGTTGCGCTCAATGCTGAACTTAAAAAACATGCAGCAACACGTTGGCGTGAAGAGAACG
CTGAAGCTATCGCTGCGTTAAATCAATTGGCTGATGAAACCGGATGTTTCTCTGATGAGTACCGGAGCTTCTAG

Structures

Antitoxin

• AlphaFold DB: A0A7U9LTM9