Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2297139..2297207 | Replicon | chromosome |
| Accession | NZ_CP032789 | ||
| Organism | Escherichia coli strain NZRM4169 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2297139..2297169 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2297139..2297207 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8Z76_RS11860 | 2292883..2293506 | + | 624 | WP_001360257.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| D8Z76_RS11865 | 2293571..2294884 | + | 1314 | WP_151538917.1 | phage tail protein | - |
| D8Z76_RS11870 | 2294886..2295155 | + | 270 | WP_053921583.1 | phage tail fiber C-terminal domain-containing protein | - |
| D8Z76_RS11885 | 2295558..2296571 | + | 1014 | WP_122993102.1 | M85 family metallopeptidase | - |
| - | 2297139..2297169 | + | 31 | - | - | Toxin |
| - | 2297139..2297207 | - | 69 | - | - | Antitoxin |
| D8Z76_RS11890 | 2297304..2297960 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| D8Z76_RS11895 | 2297961..2298152 | - | 192 | WP_001296140.1 | YebW family protein | - |
| D8Z76_RS11900 | 2298257..2298493 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| D8Z76_RS11905 | 2298611..2300050 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | nleC | 2237297..2313049 | 75752 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
