Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2242799..2243033 | Replicon | chromosome |
| Accession | NZ_CP032789 | ||
| Organism | Escherichia coli strain NZRM4169 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2242929..2243032 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2242799..2243033 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8Z76_RS11470 | 2239354..2240016 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| D8Z76_RS11475 | 2240040..2240696 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| D8Z76_RS11480 | 2240798..2241028 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| D8Z76_RS11485 | 2241167..2241541 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| D8Z76_RS11490 | 2241545..2242417 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| D8Z76_RS11495 | 2242430..2242771 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2242799..2243033 | - | 235 | - | - | Antitoxin |
| - | 2242929..2243032 | + | 104 | - | - | Toxin |
| D8Z76_RS11500 | 2243164..2244240 | - | 1077 | WP_001189085.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| D8Z76_RS11505 | 2244206..2244487 | - | 282 | WP_005127484.1 | excisionase | - |
| D8Z76_RS11510 | 2244594..2244782 | - | 189 | WP_151538908.1 | DUF1187 family protein | - |
| - | 2244598..2244776 | + | 179 | NuclAT_0 | - | - |
| - | 2244598..2244776 | + | 179 | NuclAT_0 | - | - |
| - | 2244598..2244776 | + | 179 | NuclAT_0 | - | - |
| - | 2244598..2244776 | + | 179 | NuclAT_0 | - | - |
| D8Z76_RS11515 | 2244775..2244969 | - | 195 | WP_010989194.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| D8Z76_RS11520 | 2245033..2246085 | - | 1053 | WP_001004413.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | nleC | 2237297..2313049 | 75752 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T112218 NZ_CP032789:2242929-2243032 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT112218 NZ_CP032789:c2243033-2242799 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
