Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3562043..3562161 | Replicon | chromosome |
| Accession | NZ_CP032738 | ||
| Organism | Serratia sp. 1D1416 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3562065..3562161 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3562043..3562161 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D7I37_RS17205 | 3557274..3557678 | + | 405 | WP_061799028.1 | RidA family protein | - |
| D7I37_RS17210 | 3557825..3558778 | + | 954 | WP_061799030.1 | prolyl aminopeptidase | - |
| D7I37_RS17215 | 3558810..3559040 | - | 231 | WP_061799031.1 | DNA polymerase III subunit theta | - |
| D7I37_RS17220 | 3559404..3559919 | + | 516 | WP_061799139.1 | non-heme ferritin | - |
| D7I37_RS17225 | 3560196..3560627 | + | 432 | WP_129544036.1 | CopC domain-containing protein YobA | - |
| D7I37_RS17230 | 3560631..3561512 | + | 882 | WP_061799034.1 | copper homeostasis membrane protein CopD | - |
| D7I37_RS17235 | 3561582..3561923 | + | 342 | WP_061799036.1 | YebY family protein | - |
| - | 3562043..3562161 | - | 119 | - | - | Antitoxin |
| - | 3562065..3562161 | + | 97 | - | - | Toxin |
| D7I37_RS17240 | 3562240..3562507 | - | 268 | Protein_3313 | tyrosine-type recombinase/integrase | - |
| D7I37_RS17250 | 3562787..3563107 | + | 321 | WP_129544038.1 | hypothetical protein | - |
| D7I37_RS17255 | 3563266..3563578 | + | 313 | Protein_3315 | hypothetical protein | - |
| D7I37_RS17260 | 3564298..3564723 | - | 426 | WP_129544039.1 | SRPBCC family protein | - |
| D7I37_RS17265 | 3565725..3566426 | + | 702 | WP_129544782.1 | metal-binding protein ZinT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T112189 NZ_CP032738:3562065-3562161 [Serratia sp. 1D1416]
AACAAGCCCTGCACTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCACTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT112189 NZ_CP032738:c3562161-3562043 [Serratia sp. 1D1416]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAG
