Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumAB/COG3657-dnstrm_HI1420
Location 2858496..2859084 Replicon chromosome
Accession NZ_CP032694
Organism Rhizobium jaguaris strain CCGE525

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag CCGE525_RS13955 Protein ID WP_120704792.1
Coordinates 2858496..2858801 (+) Length 102 a.a.

Antitoxin (Protein)


Gene name PumB Uniprot ID -
Locus tag CCGE525_RS13960 Protein ID WP_120704793.1
Coordinates 2858794..2859084 (+) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CCGE525_RS13940 2854401..2854979 - 579 WP_120704789.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
CCGE525_RS13945 2855451..2856401 + 951 WP_120704790.1 endonuclease/exonuclease/phosphatase family protein -
CCGE525_RS13950 2856458..2858314 - 1857 WP_120704791.1 ABC transporter ATP-binding protein/permease -
CCGE525_RS13955 2858496..2858801 + 306 WP_120704792.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
CCGE525_RS13960 2858794..2859084 + 291 WP_120704793.1 putative addiction module antidote protein Antitoxin
CCGE525_RS13965 2859188..2861041 - 1854 WP_120704794.1 ABC transporter ATP-binding protein/permease -
CCGE525_RS13970 2861436..2861897 + 462 WP_120704795.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
CCGE525_RS13975 2862014..2863180 + 1167 WP_120704796.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Addiction module killer protein, predicted

(1-95)

Antitoxin

Uncharacterized protein HI1420

(5-91)


Sequences

Toxin        


Download         Length: 102 a.a.        Molecular weight: 11502.24 Da        Isoelectric Point: 9.9403

>T112161 WP_120704792.1 NZ_CP032694:2858496-2858801 [Rhizobium jaguaris]
MLRILQTVTYQRWERRLRDERARAAIAARLSRLAFGLMGDIRPVGDGVSEMRIHYGPGYRVYFVQRGGEIIILLCGGDKS
SQARDIEQAKMLAKNSDEFDA

Download         Length: 306 bp

>T112161 NZ_CP032694:2858496-2858801 [Rhizobium jaguaris]
ATGCTTCGCATACTCCAGACGGTTACTTATCAGCGCTGGGAACGCCGGCTTCGGGATGAGCGTGCTCGCGCGGCGATTGC
TGCACGGCTTTCCCGTTTAGCATTTGGTCTTATGGGAGACATTAGACCGGTAGGCGACGGCGTGAGCGAAATGCGCATCC
ACTACGGACCGGGCTACCGAGTCTATTTTGTTCAACGCGGCGGAGAGATCATTATCCTCCTGTGCGGCGGTGATAAAAGC
AGCCAAGCTAGGGATATCGAACAAGCGAAAATGCTCGCCAAAAATTCGGACGAATTTGATGCCTGA

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10361.83 Da        Isoelectric Point: 5.0760

>AT112161 WP_120704793.1 NZ_CP032694:2858794-2859084 [Rhizobium jaguaris]
MPEKLIPYDPAEALTSNDAVDEFMRDAFESGDAGYIAHALGIVARAKGMTGIAKETGMAREALYRSFASDGNPTLKSVLA
LMQSLGFELTVKRHNI

Download         Length: 291 bp

>AT112161 NZ_CP032694:2858794-2859084 [Rhizobium jaguaris]
ATGCCTGAGAAACTAATCCCGTACGATCCCGCAGAGGCGCTAACTTCCAACGACGCCGTCGATGAATTCATGAGGGACGC
CTTTGAAAGCGGTGATGCAGGATATATCGCCCATGCGCTCGGCATCGTCGCCCGTGCGAAAGGCATGACCGGAATAGCTA
AAGAGACCGGCATGGCGCGGGAAGCTCTCTACCGCTCCTTCGCATCGGACGGCAACCCGACGCTGAAGTCGGTCCTCGCT
CTAATGCAATCGCTTGGTTTTGAACTAACGGTCAAACGACACAACATTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References