Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 300010..300575 Replicon chromosome
Accession NZ_CP032694
Organism Rhizobium jaguaris strain CCGE525

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag CCGE525_RS01410 Protein ID WP_120702724.1
Coordinates 300282..300575 (+) Length 98 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag CCGE525_RS01405 Protein ID WP_120702723.1
Coordinates 300010..300294 (+) Length 95 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CCGE525_RS01385 295467..297104 + 1638 WP_120702719.1 ABC transporter ATP-binding protein -
CCGE525_RS01390 297116..298075 + 960 WP_120702720.1 glyoxylate/hydroxypyruvate reductase A -
CCGE525_RS01395 298150..298425 + 276 WP_120702721.1 hypothetical protein -
CCGE525_RS01400 298618..299922 + 1305 WP_120702722.1 nicotinate phosphoribosyltransferase -
CCGE525_RS01405 300010..300294 + 285 WP_120702723.1 CopG family transcriptional regulator Antitoxin
CCGE525_RS01410 300282..300575 + 294 WP_120702724.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
CCGE525_RS01415 300583..301539 - 957 WP_120702725.1 hypothetical protein -
CCGE525_RS01420 301740..303905 + 2166 WP_120702726.1 mechanosensitive ion channel family protein -
CCGE525_RS01425 303927..304985 - 1059 WP_120702727.1 LacI family transcriptional regulator -
CCGE525_RS01430 305135..305428 + 294 WP_120702728.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-94)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11389.99 Da        Isoelectric Point: 10.1824

>T112159 WP_120702724.1 NZ_CP032694:300282-300575 [Rhizobium jaguaris]
MPRLIWSPRATRDVQRLYRFLTPANPDAATRAVRTIRSSVRILSHQPQLGRFIEDMSAEFREWIIDFGRDGYVVRYHYDG
DAVVILAIRHGREDGYK

Download         Length: 294 bp

>T112159 NZ_CP032694:300282-300575 [Rhizobium jaguaris]
ATGCCACGCCTGATCTGGTCGCCGCGTGCAACTCGAGATGTGCAACGGCTTTATCGATTTCTTACTCCCGCCAATCCAGA
CGCAGCCACGCGCGCTGTCAGAACAATTCGCTCCAGTGTTCGCATTTTGAGTCATCAACCGCAACTCGGGCGCTTCATTG
AGGATATGAGCGCTGAATTTCGGGAATGGATTATTGATTTCGGGCGCGACGGGTATGTTGTTCGGTATCATTATGATGGA
GATGCTGTTGTAATTTTGGCCATCCGCCACGGTCGCGAAGACGGCTACAAGTAA

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 11075.27 Da        Isoelectric Point: 4.6117

>AT112159 WP_120702723.1 NZ_CP032694:300010-300294 [Rhizobium jaguaris]
MSRALKASVEIDPDVNERLEKLAASRHRRPDLLLKEAVEQYVEREEKRESFRQDTLHAWEEYQKTGLHLTAEEVEEWLQQ
LEDGHDIEPPACHA

Download         Length: 285 bp

>AT112159 NZ_CP032694:300010-300294 [Rhizobium jaguaris]
ATGTCACGCGCTTTGAAGGCCAGTGTGGAAATTGATCCTGACGTGAACGAACGGCTTGAGAAGCTGGCCGCCAGCCGCCA
TCGCAGGCCGGATCTACTGCTGAAGGAGGCTGTCGAACAATATGTGGAGCGGGAAGAGAAGCGCGAATCCTTTCGGCAGG
ATACACTTCACGCATGGGAAGAATATCAGAAAACTGGGTTGCATTTGACTGCTGAGGAAGTCGAAGAGTGGCTTCAACAG
CTCGAAGACGGTCATGACATAGAACCGCCTGCATGCCACGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References