Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1923071..1923342 | Replicon | chromosome |
| Accession | NZ_CP032679 | ||
| Organism | Escherichia coli str. K-12 substr. MG1655 strain K-12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1923109..1923212 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1923071..1923342 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D7U33_RS09420 | 1920228..1921667 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| D7U33_RS09425 | 1921785..1922021 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| D7U33_RS09430 | 1922126..1922317 | + | 192 | WP_000457842.1 | YebW family protein | - |
| D7U33_RS09435 | 1922318..1922974 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1923071..1923342 | + | 272 | - | - | Antitoxin |
| - | 1923109..1923212 | - | 104 | - | - | Toxin |
| D7U33_RS09440 | 1923370..1923711 | - | 342 | WP_000976476.1 | YebY family protein | - |
| D7U33_RS09445 | 1923724..1924596 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| D7U33_RS09450 | 1924600..1924974 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| D7U33_RS09455 | 1925113..1925343 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| D7U33_RS09460 | 1925445..1926101 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| D7U33_RS09465 | 1926125..1926787 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T112108 NZ_CP032679:c1923212-1923109 [Escherichia coli str. K-12 substr. MG1655]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT112108 NZ_CP032679:1923071-1923342 [Escherichia coli str. K-12 substr. MG1655]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
