Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relB-parE/ParE-RHH |
| Location | 4005332..4005807 | Replicon | chromosome |
| Accession | NZ_CP032674 | ||
| Organism | Xanthobacter sp. YC-JY1 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | - |
| Locus tag | D7006_RS18745 | Protein ID | WP_237354111.1 |
| Coordinates | 4005332..4005541 (-) | Length | 70 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | D7006_RS18750 | Protein ID | WP_237354112.1 |
| Coordinates | 4005529..4005807 (-) | Length | 93 a.a. |
Genomic Context
Location: 4001409..4002800 (1392 bp)
Type: Others
Protein ID: WP_237354109.1
Type: Others
Protein ID: WP_237354109.1
Location: 4002886..4003791 (906 bp)
Type: Others
Protein ID: WP_237354110.1
Type: Others
Protein ID: WP_237354110.1
Location: 4005332..4005541 (210 bp)
Type: Toxin
Protein ID: WP_237354111.1
Type: Toxin
Protein ID: WP_237354111.1
Location: 4005529..4005807 (279 bp)
Type: Antitoxin
Protein ID: WP_237354112.1
Type: Antitoxin
Protein ID: WP_237354112.1
Location: 4006520..4008019 (1500 bp)
Type: Others
Protein ID: WP_237354113.1
Type: Others
Protein ID: WP_237354113.1
Location: 4008030..4008491 (462 bp)
Type: Others
Protein ID: WP_169124072.1
Type: Others
Protein ID: WP_169124072.1
Location: 4008702..4009676 (975 bp)
Type: Others
Protein ID: WP_237354114.1
Type: Others
Protein ID: WP_237354114.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D7006_RS18735 | 4001409..4002800 | - | 1392 | WP_237354109.1 | hypothetical protein | - |
| D7006_RS18740 (D7006_18600) | 4002886..4003791 | - | 906 | WP_237354110.1 | hypothetical protein | - |
| D7006_RS18745 (D7006_18605) | 4005332..4005541 | - | 210 | WP_237354111.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| D7006_RS18750 (D7006_18610) | 4005529..4005807 | - | 279 | WP_237354112.1 | CopG family ribbon-helix-helix protein | Antitoxin |
| D7006_RS18760 (D7006_18620) | 4006520..4008019 | - | 1500 | WP_237354113.1 | tripartite tricarboxylate transporter permease | - |
| D7006_RS18765 (D7006_18625) | 4008030..4008491 | - | 462 | WP_169124072.1 | tripartite tricarboxylate transporter TctB family protein | - |
| D7006_RS18770 (D7006_18630) | 4008702..4009676 | - | 975 | WP_237354114.1 | tripartite tricarboxylate transporter substrate binding protein BugD | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 70 a.a. Molecular weight: 7437.54 Da Isoelectric Point: 11.9891
>T112088 WP_237354111.1 NZ_CP032674:c4005541-4005332 [Xanthobacter sp. YC-JY1]
MPQVRFSPAAIRDLERLRAFLSPKNPAAAKRAGEAIIDGVRALGTHPHMGPDDRRSSRAVSGLAHPVWG
MPQVRFSPAAIRDLERLRAFLSPKNPAAAKRAGEAIIDGVRALGTHPHMGPDDRRSSRAVSGLAHPVWG
Download Length: 210 bp
>T112088 NZ_CP032674:c4005541-4005332 [Xanthobacter sp. YC-JY1]
ATGCCGCAAGTGAGATTTTCGCCAGCTGCGATCCGTGACCTTGAGCGGCTACGGGCGTTTCTAAGCCCCAAGAATCCTGC
CGCTGCGAAAAGAGCCGGCGAGGCCATCATAGACGGCGTTCGTGCACTCGGCACACATCCTCACATGGGGCCGGACGATC
GACGGTCTTCCCGAGCAGTTTCGGGACTGGCTCATCCCGTTTGGGGATAG
ATGCCGCAAGTGAGATTTTCGCCAGCTGCGATCCGTGACCTTGAGCGGCTACGGGCGTTTCTAAGCCCCAAGAATCCTGC
CGCTGCGAAAAGAGCCGGCGAGGCCATCATAGACGGCGTTCGTGCACTCGGCACACATCCTCACATGGGGCCGGACGATC
GACGGTCTTCCCGAGCAGTTTCGGGACTGGCTCATCCCGTTTGGGGATAG
Antitoxin
Download Length: 93 a.a. Molecular weight: 10699.01 Da Isoelectric Point: 6.4734
>AT112088 WP_237354112.1 NZ_CP032674:c4005807-4005529 [Xanthobacter sp. YC-JY1]
MASATSIKLDDELKGRIQRLAEVRRRSSHWIMREAIAQYVEREEKREALRQDSLKAWDEFQATGVHATAEDVEKWLSSWG
TESELPAPQCRK
MASATSIKLDDELKGRIQRLAEVRRRSSHWIMREAIAQYVEREEKREALRQDSLKAWDEFQATGVHATAEDVEKWLSSWG
TESELPAPQCRK
Download Length: 279 bp
>AT112088 NZ_CP032674:c4005807-4005529 [Xanthobacter sp. YC-JY1]
ATGGCATCGGCAACATCCATCAAACTCGACGATGAGTTGAAAGGGCGCATCCAGCGTCTCGCGGAAGTTCGCCGTCGCTC
CTCCCATTGGATCATGCGGGAGGCGATCGCGCAGTACGTGGAGCGCGAGGAAAAGCGCGAGGCGCTGCGACAGGACTCCC
TCAAGGCATGGGACGAGTTTCAGGCAACGGGCGTGCATGCCACAGCCGAGGATGTCGAGAAGTGGTTGTCGAGTTGGGGA
ACTGAAAGCGAGCTGCCGGCACCTCAATGCCGCAAGTGA
ATGGCATCGGCAACATCCATCAAACTCGACGATGAGTTGAAAGGGCGCATCCAGCGTCTCGCGGAAGTTCGCCGTCGCTC
CTCCCATTGGATCATGCGGGAGGCGATCGCGCAGTACGTGGAGCGCGAGGAAAAGCGCGAGGCGCTGCGACAGGACTCCC
TCAAGGCATGGGACGAGTTTCAGGCAACGGGCGTGCATGCCACAGCCGAGGATGTCGAGAAGTGGTTGTCGAGTTGGGGA
ACTGAAAGCGAGCTGCCGGCACCTCAATGCCGCAAGTGA