Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/VapC-VapB |
| Location | 2671802..2672358 | Replicon | chromosome |
| Accession | NZ_CP032674 | ||
| Organism | Xanthobacter sp. YC-JY1 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | D7006_RS12465 | Protein ID | WP_237356810.1 |
| Coordinates | 2671993..2672358 (+) | Length | 122 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | - |
| Locus tag | D7006_RS12460 | Protein ID | WP_169120256.1 |
| Coordinates | 2671802..2671996 (+) | Length | 65 a.a. |
Genomic Context
Location: 2668724..2669785 (1062 bp)
Type: Others
Protein ID: WP_169120260.1
Type: Others
Protein ID: WP_169120260.1
Location: 2671802..2671996 (195 bp)
Type: Antitoxin
Protein ID: WP_169120256.1
Type: Antitoxin
Protein ID: WP_169120256.1
Location: 2671993..2672358 (366 bp)
Type: Toxin
Protein ID: WP_237356810.1
Type: Toxin
Protein ID: WP_237356810.1
Location: 2672400..2672918 (519 bp)
Type: Others
Protein ID: WP_237356811.1
Type: Others
Protein ID: WP_237356811.1
Location: 2673096..2674031 (936 bp)
Type: Others
Protein ID: WP_169120239.1
Type: Others
Protein ID: WP_169120239.1
Location: 2674771..2675718 (948 bp)
Type: Others
Protein ID: WP_169120235.1
Type: Others
Protein ID: WP_169120235.1
Location: 2675711..2677057 (1347 bp)
Type: Others
Protein ID: WP_237356813.1
Type: Others
Protein ID: WP_237356813.1
Location: 2666973..2668463 (1491 bp)
Type: Others
Protein ID: WP_169120262.1
Type: Others
Protein ID: WP_169120262.1
Location: 2669865..2671349 (1485 bp)
Type: Others
Protein ID: WP_237356809.1
Type: Others
Protein ID: WP_237356809.1
Location: 2671346..2671633 (288 bp)
Type: Others
Protein ID: WP_024278942.1
Type: Others
Protein ID: WP_024278942.1
Location: 2674100..2674525 (426 bp)
Type: Others
Protein ID: WP_237356812.1
Type: Others
Protein ID: WP_237356812.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D7006_RS12440 (D7006_12355) | 2666973..2668463 | - | 1491 | WP_169120262.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB | - |
| D7006_RS12445 (D7006_12360) | 2668724..2669785 | + | 1062 | WP_169120260.1 | glycosyltransferase family 2 protein | - |
| D7006_RS12450 (D7006_12365) | 2669865..2671349 | - | 1485 | WP_237356809.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA | - |
| D7006_RS12455 (D7006_12370) | 2671346..2671633 | - | 288 | WP_024278942.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC | - |
| D7006_RS12460 (D7006_12375) | 2671802..2671996 | + | 195 | WP_169120256.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin |
| D7006_RS12465 (D7006_12380) | 2671993..2672358 | + | 366 | WP_237356810.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| D7006_RS12470 (D7006_12385) | 2672400..2672918 | + | 519 | WP_237356811.1 | Holliday junction resolvase RuvX | - |
| D7006_RS12475 (D7006_12390) | 2673096..2674031 | + | 936 | WP_169120239.1 | AEC family transporter | - |
| D7006_RS12480 (D7006_12395) | 2674100..2674525 | - | 426 | WP_237356812.1 | hypothetical protein | - |
| D7006_RS12485 (D7006_12400) | 2674771..2675718 | + | 948 | WP_169120235.1 | aspartate carbamoyltransferase catalytic subunit | - |
| D7006_RS12490 (D7006_12405) | 2675711..2677057 | + | 1347 | WP_237356813.1 | dihydroorotase | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 122 a.a. Molecular weight: 13182.35 Da Isoelectric Point: 5.1055
>T112087 WP_237356810.1 NZ_CP032674:2671993-2672358 [Xanthobacter sp. YC-JY1]
MILVDTSIWIDHFRQCDPRLQQVLADGSVMSHPFVIGELALGNLRQREVILDAIAALPQAIIAEPAEVLGLITTESLHGR
GIGYVDAHLIASVRLTPEAVLWTRDRRLAAVAEKLGIALEA
MILVDTSIWIDHFRQCDPRLQQVLADGSVMSHPFVIGELALGNLRQREVILDAIAALPQAIIAEPAEVLGLITTESLHGR
GIGYVDAHLIASVRLTPEAVLWTRDRRLAAVAEKLGIALEA
Download Length: 366 bp
>T112087 NZ_CP032674:2671993-2672358 [Xanthobacter sp. YC-JY1]
ATGATTCTGGTCGATACGTCCATCTGGATCGATCATTTTCGCCAATGCGATCCGAGGCTGCAGCAGGTGCTGGCGGACGG
CTCCGTGATGTCGCATCCCTTCGTGATCGGCGAACTCGCACTGGGGAACCTGCGTCAGCGGGAGGTCATCCTGGATGCCA
TCGCCGCCTTGCCGCAGGCGATCATTGCCGAACCGGCCGAAGTGCTCGGCCTCATAACGACCGAGTCGCTCCATGGCCGA
GGGATTGGATATGTCGACGCGCACTTGATTGCGTCGGTTCGATTGACGCCGGAAGCGGTTTTGTGGACGCGCGACAGGCG
GTTGGCAGCTGTTGCGGAAAAACTGGGAATTGCGCTTGAGGCGTGA
ATGATTCTGGTCGATACGTCCATCTGGATCGATCATTTTCGCCAATGCGATCCGAGGCTGCAGCAGGTGCTGGCGGACGG
CTCCGTGATGTCGCATCCCTTCGTGATCGGCGAACTCGCACTGGGGAACCTGCGTCAGCGGGAGGTCATCCTGGATGCCA
TCGCCGCCTTGCCGCAGGCGATCATTGCCGAACCGGCCGAAGTGCTCGGCCTCATAACGACCGAGTCGCTCCATGGCCGA
GGGATTGGATATGTCGACGCGCACTTGATTGCGTCGGTTCGATTGACGCCGGAAGCGGTTTTGTGGACGCGCGACAGGCG
GTTGGCAGCTGTTGCGGAAAAACTGGGAATTGCGCTTGAGGCGTGA
Antitoxin
Download Length: 65 a.a. Molecular weight: 7126.27 Da Isoelectric Point: 10.6723
>AT112087 WP_169120256.1 NZ_CP032674:2671802-2671996 [Xanthobacter sp. YC-JY1]
MRTTLAIDDELLARAQALTGMTEKSALVREALKALIARESALRLARLGGSEPQLEPIRRRRPDE
MRTTLAIDDELLARAQALTGMTEKSALVREALKALIARESALRLARLGGSEPQLEPIRRRRPDE
Download Length: 195 bp
>AT112087 NZ_CP032674:2671802-2671996 [Xanthobacter sp. YC-JY1]
ATGCGAACCACCCTCGCCATAGACGACGAGCTTCTCGCAAGAGCACAGGCATTGACCGGCATGACAGAGAAGTCGGCTCT
CGTGCGCGAGGCACTCAAAGCGCTGATCGCCCGCGAGAGCGCATTGCGTCTCGCCCGTCTCGGCGGGAGCGAGCCCCAGC
TTGAACCGATCCGTAGACGCCGGCCCGACGAATGA
ATGCGAACCACCCTCGCCATAGACGACGAGCTTCTCGCAAGAGCACAGGCATTGACCGGCATGACAGAGAAGTCGGCTCT
CGTGCGCGAGGCACTCAAAGCGCTGATCGCCCGCGAGAGCGCATTGCGTCTCGCCCGTCTCGGCGGGAGCGAGCCCCAGC
TTGAACCGATCCGTAGACGCCGGCCCGACGAATGA