Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1959259..1959530 | Replicon | chromosome |
| Accession | NZ_CP032667 | ||
| Organism | Escherichia coli str. K-12 substr. MG1655 strain K-12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1959389..1959492 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1959259..1959530 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8B36_RS09600 | 1955814..1956476 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| D8B36_RS09605 | 1956500..1957156 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| D8B36_RS09610 | 1957258..1957488 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| D8B36_RS09615 | 1957627..1958001 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| D8B36_RS09620 | 1958005..1958877 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| D8B36_RS09625 | 1958890..1959231 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1959259..1959530 | - | 272 | - | - | Antitoxin |
| - | 1959389..1959492 | + | 104 | - | - | Toxin |
| D8B36_RS09630 | 1959627..1960283 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| D8B36_RS09635 | 1960284..1960475 | - | 192 | WP_000457842.1 | YebW family protein | - |
| D8B36_RS09640 | 1960580..1960816 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| D8B36_RS09645 | 1960934..1962373 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T112067 NZ_CP032667:1959389-1959492 [Escherichia coli str. K-12 substr. MG1655]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT112067 NZ_CP032667:c1959530-1959259 [Escherichia coli str. K-12 substr. MG1655]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
