Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2594303..2594397 | Replicon | chromosome |
| Accession | NZ_CP032566 | ||
| Organism | Yersinia pseudotuberculosis strain IP2666pIB1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2594304..2594397 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2594303..2594397 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DN756_RS11995 | 2589490..2591568 | - | 2079 | WP_012304223.1 | flagellar biosynthesis protein FlhA | - |
| DN756_RS12000 | 2591568..2592728 | - | 1161 | WP_002211099.1 | flagellar type III secretion system protein FlhB | - |
| DN756_RS12010 | 2593260..2593724 | + | 465 | WP_011192280.1 | hypothetical protein | - |
| DN756_RS12015 | 2593718..2594044 | + | 327 | WP_011192279.1 | DUF1493 family protein | - |
| - | 2594303..2594397 | + | 95 | - | - | Antitoxin |
| - | 2594304..2594397 | - | 94 | - | - | Toxin |
| DN756_RS12025 | 2594567..2594908 | - | 342 | WP_002211095.1 | YebY family protein | - |
| DN756_RS12030 | 2595005..2595889 | - | 885 | WP_012304224.1 | copper homeostasis membrane protein CopD | - |
| DN756_RS12035 | 2595892..2596278 | - | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| DN756_RS12040 | 2596657..2597166 | - | 510 | WP_002211092.1 | non-heme ferritin | - |
| DN756_RS12045 | 2597567..2597797 | + | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| DN756_RS12050 | 2597857..2598807 | - | 951 | WP_012304225.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T111970 NZ_CP032566:c2594397-2594304 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT111970 NZ_CP032566:2594303-2594397 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
