Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3573113..3573347 | Replicon | chromosome |
| Accession | NZ_CP032523 | ||
| Organism | Shigella sonnei strain AR_0030 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3573243..3573346 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3573113..3573347 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM357_RS18275 | 3569668..3570330 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AM357_RS18280 | 3570354..3571010 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AM357_RS18285 | 3571112..3571342 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM357_RS18290 | 3571481..3571855 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| AM357_RS18295 | 3571859..3572731 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| AM357_RS18300 | 3572744..3573085 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 3573113..3573347 | - | 235 | - | - | Antitoxin |
| - | 3573243..3573346 | + | 104 | - | - | Toxin |
| AM357_RS18305 | 3573478..3574554 | - | 1077 | WP_001189101.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| AM357_RS18325 | 3576650..3576766 | - | 117 | Protein_3518 | host-nuclease inhibitor Gam family protein | - |
| AM357_RS27085 | 3576744..3577064 | - | 321 | WP_241556168.1 | exodeoxyribonuclease VIII | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 | 3567611..3601814 | 34203 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T111941 NZ_CP032523:3573243-3573346 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT111941 NZ_CP032523:c3573347-3573113 [Shigella sonnei]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGATAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGATAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
