Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2129514..2129785 | Replicon | chromosome |
| Accession | NZ_CP032515 | ||
| Organism | Escherichia coli strain 118UI | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2129552..2129655 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2129514..2129785 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Eco118UI_RS10755 | 2126671..2128110 | + | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| Eco118UI_RS10760 | 2128228..2128464 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| Eco118UI_RS10765 | 2128569..2128760 | + | 192 | WP_001296140.1 | YebW family protein | - |
| Eco118UI_RS10770 | 2128761..2129417 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2129514..2129785 | + | 272 | - | - | Antitoxin |
| - | 2129552..2129655 | - | 104 | - | - | Toxin |
| Eco118UI_RS10775 | 2129813..2130154 | - | 342 | WP_000976481.1 | YebY family protein | - |
| Eco118UI_RS10780 | 2130167..2131039 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| Eco118UI_RS10785 | 2131043..2131417 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| Eco118UI_RS10790 | 2131556..2131786 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| Eco118UI_RS10795 | 2131888..2132544 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| Eco118UI_RS10800 | 2132568..2133230 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2121284..2153572 | 32288 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T111899 NZ_CP032515:c2129655-2129552 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT111899 NZ_CP032515:2129514-2129785 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
