Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2208337..2208608 | Replicon | chromosome |
| Accession | NZ_CP032426 | ||
| Organism | Escherichia coli strain SCEC020001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2208467..2208570 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2208337..2208608 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7V21_RS11975 | 2204892..2205554 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C7V21_RS11980 | 2205578..2206234 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C7V21_RS11985 | 2206336..2206566 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C7V21_RS11990 | 2206705..2207079 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C7V21_RS11995 | 2207083..2207955 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C7V21_RS12000 | 2207968..2208309 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2208337..2208608 | - | 272 | - | - | Antitoxin |
| - | 2208467..2208570 | + | 104 | - | - | Toxin |
| C7V21_RS12005 | 2208705..2209361 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C7V21_RS12010 | 2209362..2209553 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C7V21_RS12015 | 2209658..2209894 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C7V21_RS12020 | 2210012..2211451 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T111783 NZ_CP032426:2208467-2208570 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT111783 NZ_CP032426:c2208608-2208337 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
