Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2394146..2394290 | Replicon | chromosome |
| Accession | NZ_CP032354 | ||
| Organism | Klebsiella variicola strain 15WZ-82 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2394182..2394284 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2394146..2394290 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4N21_RS11890 | 2389276..2391336 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| D4N21_RS11895 | 2391340..2391999 | - | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| D4N21_RS11900 | 2392078..2392308 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| D4N21_RS11905 | 2392422..2392796 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| D4N21_RS11910 | 2392800..2393669 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| D4N21_RS11915 | 2393686..2394024 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 2394146..2394290 | - | 145 | - | - | Antitoxin |
| - | 2394182..2394284 | + | 103 | - | - | Toxin |
| D4N21_RS30700 | 2394669..2394812 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| D4N21_RS11925 | 2394916..2395905 | - | 990 | WP_032691211.1 | VirK/YbjX family protein | - |
| D4N21_RS11930 | 2396041..2396694 | + | 654 | WP_022066249.1 | protein-serine/threonine phosphatase | - |
| D4N21_RS11935 | 2396691..2396882 | - | 192 | WP_002911395.1 | YebW family protein | - |
| D4N21_RS11940 | 2396980..2397219 | - | 240 | WP_002911393.1 | YebV family protein | - |
| D4N21_RS11945 | 2397335..2398768 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T111684 NZ_CP032354:2394182-2394284 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT111684 NZ_CP032354:c2394290-2394146 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
