Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | PP_4151-4152/excise(antitoxin) |
| Location | 2006059..2007089 | Replicon | chromosome |
| Accession | NZ_CP032312 | ||
| Organism | Pannonibacter phragmitetus BB | ||
Toxin (Protein)
| Gene name | PP_4152 | Uniprot ID | - |
| Locus tag | P874_RS09320 | Protein ID | WP_094462904.1 |
| Coordinates | 2006520..2007089 (+) | Length | 190 a.a. |
Antitoxin (Protein)
| Gene name | PP_4151 | Uniprot ID | A0A0L0IUA3 |
| Locus tag | P874_RS09315 | Protein ID | WP_050474753.1 |
| Coordinates | 2006059..2006523 (+) | Length | 155 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P874_RS09290 | 2001480..2002124 | - | 645 | WP_058900145.1 | hypothetical protein | - |
| P874_RS09295 | 2002439..2004454 | - | 2016 | WP_208999574.1 | 5'-nucleotidase C-terminal domain-containing protein | - |
| P874_RS09300 | 2004611..2005339 | - | 729 | WP_208999575.1 | lipoyl(octanoyl) transferase LipB | - |
| P874_RS09305 | 2005483..2005749 | + | 267 | WP_050474723.1 | flagellar motor switch protein FliN | - |
| P874_RS09310 | 2005688..2005912 | - | 225 | WP_094463004.1 | pentapeptide repeat-containing protein | - |
| P874_RS09315 | 2006059..2006523 | + | 465 | WP_050474753.1 | helix-turn-helix domain-containing protein | Antitoxin |
| P874_RS09320 | 2006520..2007089 | + | 570 | WP_094462904.1 | PIN domain-containing protein | Toxin |
| P874_RS09330 | 2007534..2007851 | + | 318 | WP_050474725.1 | YARHG domain-containing protein | - |
| P874_RS09335 | 2008083..2009498 | + | 1416 | WP_162936467.1 | magnesium transporter | - |
| P874_RS09340 | 2009590..2009988 | + | 399 | WP_094462906.1 | MerR family DNA-binding transcriptional regulator | - |
| P874_RS09345 | 2010015..2010461 | + | 447 | WP_050474728.1 | PaaI family thioesterase | - |
| P874_RS09350 | 2010487..2010936 | + | 450 | WP_050474729.1 | GNAT family N-acetyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 190 a.a. Molecular weight: 21071.45 Da Isoelectric Point: 6.7452
>T111642 WP_094462904.1 NZ_CP032312:2006520-2007089 [Pannonibacter phragmitetus BB]
VSQARVLLDANVLYPAPLRDLLLQLAVSDVIIAAWTERIHCEWIEALLRRQPWRERRALERTRDLMNEAISDCLIHGYEK
IIPSLVLPDPDDRHVLAAAIAGRCGVILTHNTRDFPPEALAPHGIEAQNPDEFLLAHLSRVPGLFCAAVKKVRSRLKTPP
LDPGEYLAVLRRQGLIETAAGLETFASSI
VSQARVLLDANVLYPAPLRDLLLQLAVSDVIIAAWTERIHCEWIEALLRRQPWRERRALERTRDLMNEAISDCLIHGYEK
IIPSLVLPDPDDRHVLAAAIAGRCGVILTHNTRDFPPEALAPHGIEAQNPDEFLLAHLSRVPGLFCAAVKKVRSRLKTPP
LDPGEYLAVLRRQGLIETAAGLETFASSI
Download Length: 570 bp
>T111642 NZ_CP032312:2006520-2007089 [Pannonibacter phragmitetus BB]
GTGAGTCAGGCTCGGGTTCTGCTCGACGCAAATGTTCTTTACCCGGCCCCACTGCGGGATCTGTTGCTCCAGCTTGCCGT
TTCGGACGTTATTATTGCGGCATGGACCGAACGCATACACTGCGAGTGGATTGAGGCGCTGTTGCGCAGGCAGCCGTGGC
GCGAGCGCCGGGCGCTTGAGCGGACAAGGGACCTTATGAATGAGGCAATAAGCGACTGCCTCATTCATGGATACGAGAAA
ATTATCCCCTCGCTTGTCTTGCCTGACCCGGATGACCGCCATGTGCTTGCGGCGGCGATTGCCGGGCGCTGTGGCGTTAT
CCTGACACATAACACCAGGGATTTTCCGCCAGAGGCGCTGGCTCCTCATGGCATTGAAGCGCAAAATCCGGACGAGTTCC
TGCTCGCGCACCTTTCTCGTGTGCCGGGACTGTTCTGCGCTGCAGTGAAAAAAGTGCGGTCACGCCTGAAGACGCCGCCG
CTGGATCCTGGTGAATATCTGGCTGTTCTGAGGCGTCAGGGGCTGATCGAAACGGCAGCCGGACTGGAGACCTTTGCCAG
CTCGATCTGA
GTGAGTCAGGCTCGGGTTCTGCTCGACGCAAATGTTCTTTACCCGGCCCCACTGCGGGATCTGTTGCTCCAGCTTGCCGT
TTCGGACGTTATTATTGCGGCATGGACCGAACGCATACACTGCGAGTGGATTGAGGCGCTGTTGCGCAGGCAGCCGTGGC
GCGAGCGCCGGGCGCTTGAGCGGACAAGGGACCTTATGAATGAGGCAATAAGCGACTGCCTCATTCATGGATACGAGAAA
ATTATCCCCTCGCTTGTCTTGCCTGACCCGGATGACCGCCATGTGCTTGCGGCGGCGATTGCCGGGCGCTGTGGCGTTAT
CCTGACACATAACACCAGGGATTTTCCGCCAGAGGCGCTGGCTCCTCATGGCATTGAAGCGCAAAATCCGGACGAGTTCC
TGCTCGCGCACCTTTCTCGTGTGCCGGGACTGTTCTGCGCTGCAGTGAAAAAAGTGCGGTCACGCCTGAAGACGCCGCCG
CTGGATCCTGGTGAATATCTGGCTGTTCTGAGGCGTCAGGGGCTGATCGAAACGGCAGCCGGACTGGAGACCTTTGCCAG
CTCGATCTGA
Antitoxin
Download Length: 155 a.a. Molecular weight: 17093.81 Da Isoelectric Point: 8.0758
>AT111642 WP_050474753.1 NZ_CP032312:2006059-2006523 [Pannonibacter phragmitetus BB]
MTFPVYSQRRPTRQEAAVARVSEQALACHARDGAPLKLRVTGHEETEVVELPAGAVTLLMEILKAMAAGQGVTVVPDDAE
LTTVQAAELLNVSRPFLIKLLEEGKIPHRKVGKHRRALMQDVIAYKRIMDRRREEILDQLVAEAQEQGMGYGAR
MTFPVYSQRRPTRQEAAVARVSEQALACHARDGAPLKLRVTGHEETEVVELPAGAVTLLMEILKAMAAGQGVTVVPDDAE
LTTVQAAELLNVSRPFLIKLLEEGKIPHRKVGKHRRALMQDVIAYKRIMDRRREEILDQLVAEAQEQGMGYGAR
Download Length: 465 bp
>AT111642 NZ_CP032312:2006059-2006523 [Pannonibacter phragmitetus BB]
ATGACATTCCCGGTATACAGTCAGCGCAGGCCCACCCGGCAGGAGGCAGCGGTTGCACGCGTTTCCGAGCAGGCCCTTGC
CTGCCACGCGCGTGACGGAGCGCCACTGAAATTGCGCGTAACGGGGCACGAAGAGACAGAGGTGGTGGAACTGCCGGCAG
GCGCAGTTACTCTGCTGATGGAAATTCTCAAGGCCATGGCGGCGGGGCAGGGGGTGACGGTTGTTCCCGATGATGCCGAG
TTGACCACGGTACAGGCTGCAGAGCTTCTGAATGTGTCCCGGCCCTTCCTGATCAAGCTCCTGGAGGAAGGTAAAATTCC
CCATCGCAAGGTCGGGAAGCACCGGCGGGCGCTCATGCAGGACGTGATTGCTTACAAGCGCATCATGGATCGCAGGCGGG
AGGAAATCCTCGACCAACTGGTTGCCGAAGCGCAGGAACAGGGCATGGGATACGGCGCAAGGTGA
ATGACATTCCCGGTATACAGTCAGCGCAGGCCCACCCGGCAGGAGGCAGCGGTTGCACGCGTTTCCGAGCAGGCCCTTGC
CTGCCACGCGCGTGACGGAGCGCCACTGAAATTGCGCGTAACGGGGCACGAAGAGACAGAGGTGGTGGAACTGCCGGCAG
GCGCAGTTACTCTGCTGATGGAAATTCTCAAGGCCATGGCGGCGGGGCAGGGGGTGACGGTTGTTCCCGATGATGCCGAG
TTGACCACGGTACAGGCTGCAGAGCTTCTGAATGTGTCCCGGCCCTTCCTGATCAAGCTCCTGGAGGAAGGTAAAATTCC
CCATCGCAAGGTCGGGAAGCACCGGCGGGCGCTCATGCAGGACGTGATTGCTTACAAGCGCATCATGGATCGCAGGCGGG
AGGAAATCCTCGACCAACTGGTTGCCGAAGCGCAGGAACAGGGCATGGGATACGGCGCAAGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|