Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3159447..3159536 Replicon chromosome
Accession NZ_CP032296
Organism Rahnella aquatilis strain ZF7

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3159447..3159536 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3159447..3159536 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D3Z09_RS14555 3154608..3156587 + 1980 WP_119261799.1 MBL fold metallo-hydrolase -
D3Z09_RS14560 3156646..3157434 + 789 WP_119261800.1 hypothetical protein -
D3Z09_RS14565 3157635..3158546 - 912 WP_119261801.1 cation diffusion facilitator family transporter -
D3Z09_RS14575 3159212..3159364 + 153 WP_072012305.1 tyrosine-type recombinase/integrase -
- 3159447..3159536 - 90 - - Toxin
D3Z09_RS14580 3159692..3160027 - 336 WP_013576173.1 YebY family protein -
D3Z09_RS14585 3160079..3160963 - 885 WP_037037430.1 copper homeostasis membrane protein CopD -
D3Z09_RS14590 3160967..3161350 - 384 WP_013576175.1 copper homeostasis periplasmic binding protein CopC -
D3Z09_RS14595 3161492..3161998 - 507 WP_013576176.1 non-heme ferritin -
D3Z09_RS14600 3162405..3162635 + 231 WP_013576177.1 DNA polymerase III subunit theta -
D3Z09_RS14605 3162655..3163611 - 957 WP_013576178.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 90 bp

>T111600 NZ_CP032296:c3159536-3159447 [Rahnella aquatilis]
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCG
GTCTTTTTTT

Antitoxin


Download         Length: 90 bp

>AT111600 NZ_CP032296:3159447-3159536 [Rahnella aquatilis]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References