Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 432107..432756 Replicon chromosome
Accession NZ_CP032286
Organism Acinetobacter sp. WCHA55

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag CDG62_RS04845 Protein ID WP_087527392.1
Coordinates 432370..432756 (+) Length 129 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag CDG62_RS04840 Protein ID WP_087527391.1
Coordinates 432107..432364 (+) Length 86 a.a.

Genomic Context

CDG62_RS04820CDG62_RS04825CDG62_RS04830CDG62_RS04840CDG62_RS04845CDG62_RS04850CDG62_RS04855CDG62_RS04860CDG62_RS04835
Location: 427727..428092 (366 bp)
Type: Others
Protein ID: WP_004691290.1
Location: 428287..429777 (1491 bp)
Type: Others
Protein ID: WP_087527389.1
Location: 429916..430706 (791 bp)
Type: Others
Protein ID: Protein_375
Location: 432107..432364 (258 bp)
Type: Antitoxin
Protein ID: WP_087527391.1
Location: 432370..432756 (387 bp)
Type: Toxin
Protein ID: WP_087527392.1
Location: 433277..434314 (1038 bp)
Type: Others
Protein ID: WP_087527393.1
Location: 434385..434957 (573 bp)
Type: Others
Protein ID: WP_087527394.1
Location: 435139..437421 (2283 bp)
Type: Others
Protein ID: WP_087527395.1
Location: 430742..431914 (1173 bp)
Type: Others
Protein ID: WP_087527390.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CDG62_RS04820427727..428092+366WP_004691290.150S ribosomal protein L17-
CDG62_RS04825428287..429777+1491WP_087527389.1NAD(P)/FAD-dependent oxidoreductase-
CDG62_RS04830429916..430706+791Protein_375alpha/beta hydrolase-
CDG62_RS04835430742..431914-1173WP_087527390.1acyl-CoA dehydrogenase family protein-
CDG62_RS04840432107..432364+258WP_087527391.1succinate dehydrogenase assembly factor 2Antitoxin
CDG62_RS04845432370..432756+387WP_087527392.1hypothetical proteinToxin
CDG62_RS04850433277..434314+1038WP_087527393.1hypothetical protein-
CDG62_RS04855434385..434957+573WP_087527394.1rhombosortase-
CDG62_RS04860435139..437421+2283WP_087527395.1TRAP transporter large permease subunit-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(6-127)

Antitoxin

Flavinator of succinate dehydrogenase

(10-82)


Sequences

Toxin        


Download         Length: 129 a.a.        Molecular weight: 15368.30 Da        Isoelectric Point: 10.3370

>T111590 WP_087527392.1 NZ_CP032286:432370-432756 [Acinetobacter sp. WCHA55]
MEHRYFQLKPSRVAYVFQLSIYAVLMFVLYQLLPLGVWLIALVAGFVLYLFFLRGPQHFQLQHLDGRDWSLSHQKQTNVQ
RVQISHIVDHRAYIVIYFQHFRAKPMLVWCDQLPIPQWKALKILTKMQ

Download         Length: 387 bp

>T111590 NZ_CP032286:432370-432756 [Acinetobacter sp. WCHA55]
ATGGAACATCGTTATTTTCAACTTAAACCCAGTCGTGTGGCTTATGTGTTTCAGTTGTCGATTTATGCCGTTCTAATGTT
TGTCCTGTATCAGCTACTTCCTTTAGGAGTGTGGCTGATCGCTTTAGTTGCTGGCTTTGTGCTGTATTTGTTTTTTCTAC
GTGGGCCGCAACATTTTCAGCTTCAGCATTTAGATGGTCGTGATTGGTCTTTGTCACATCAGAAACAAACCAATGTACAG
CGGGTACAGATCAGTCATATTGTGGATCATCGCGCTTATATTGTGATTTATTTTCAACACTTTAGAGCAAAACCGATGTT
GGTTTGGTGTGATCAGCTACCAATCCCACAATGGAAAGCCCTGAAAATACTCACCAAAATGCAATAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 10152.62 Da        Isoelectric Point: 4.7091

>AT111590 WP_087527391.1 NZ_CP032286:432107-432364 [Acinetobacter sp. WCHA55]
MTEEMSLEERKVIYRARRGLKEIDVYFDPYVKNYYLQADPAEKAMFAALVEQEDPDLLDWFMEVSEPPHSEMKTLIQKLK
HYVHG

Download         Length: 258 bp

>AT111590 NZ_CP032286:432107-432364 [Acinetobacter sp. WCHA55]
ATGACTGAAGAAATGAGCTTGGAAGAACGTAAAGTAATCTATCGCGCACGTCGTGGTTTAAAAGAAATTGATGTGTATTT
TGACCCTTATGTGAAGAATTATTATCTTCAGGCGGATCCTGCGGAAAAGGCCATGTTTGCTGCTTTGGTTGAACAGGAAG
ATCCAGATTTGCTGGATTGGTTTATGGAAGTCTCTGAGCCACCGCATTCTGAAATGAAAACTTTGATTCAAAAATTAAAA
CACTATGTACACGGATAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References