Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | BrnTA/BrnT-BrnA |
Location | 352573..353161 | Replicon | plasmid pOXA58_010055 |
Accession | NZ_CP032285 | ||
Organism | Acinetobacter sp. WCHA55 |
Toxin (Protein)
Gene name | brnT | Uniprot ID | N8SM64 |
Locus tag | CDG62_RS02760 | Protein ID | WP_000438825.1 |
Coordinates | 352874..353161 (-) | Length | 96 a.a. |
Antitoxin (Protein)
Gene name | brnA | Uniprot ID | D3JXQ4 |
Locus tag | CDG62_RS02755 | Protein ID | WP_004728120.1 |
Coordinates | 352573..352887 (-) | Length | 105 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
CDG62_RS02730 | 348313..349197 | - | 885 | WP_000155092.1 | Mph(E) family macrolide 2'-phosphotransferase | - |
CDG62_RS02735 | 349253..350728 | - | 1476 | WP_000052512.1 | ABC-F type ribosomal protection protein Msr(E) | - |
CDG62_RS02740 | 351221..351502 | - | 282 | WP_000985609.1 | putative addiction module antidote protein | - |
CDG62_RS02745 | 351503..351805 | - | 303 | WP_000286964.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
CDG62_RS02750 | 351954..352484 | + | 531 | WP_000172759.1 | hypothetical protein | - |
CDG62_RS02755 | 352573..352887 | - | 315 | WP_004728120.1 | BrnA antitoxin family protein | Antitoxin |
CDG62_RS02760 | 352874..353161 | - | 288 | WP_000438825.1 | BrnT family toxin | Toxin |
CDG62_RS02765 | 353391..353996 | - | 606 | WP_000447788.1 | LysE family translocator | - |
CDG62_RS02770 | 354069..354682 | - | 614 | Protein_348 | IS4 family transposase | - |
CDG62_RS02775 | 354745..355877 | - | 1133 | Protein_349 | IS3-like element ISAba14 family transposase | - |
CDG62_RS02780 | 355968..356444 | - | 477 | Protein_350 | IS4-like element ISAba1 family transposase | - |
CDG62_RS02785 | 356520..357347 | - | 828 | WP_000073658.1 | AraC family transcriptional regulator | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | ARR-3 / qacE / sul1 / blaPER-1 / aph(3')-VIa / cmlB1 / mph(E) / msr(E) / blaOXA-58 | - | 1..372328 | 372328 | |
- | inside | IScluster/Tn | mph(E) / msr(E) / blaOXA-58 | - | 345092..364862 | 19770 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11304.70 Da Isoelectric Point: 5.6205
>T111589 WP_000438825.1 NZ_CP032285:c353161-352874 [Acinetobacter sp. WCHA55]
MEQYFEWDEAKNRKNQKKHDISFETASLVFEDPLRISIQDRHTDGEERWQTIGRVKGVLMLLVAHTIFDEDDCEIIRIIS
ARQVTKAERNKYEHG
MEQYFEWDEAKNRKNQKKHDISFETASLVFEDPLRISIQDRHTDGEERWQTIGRVKGVLMLLVAHTIFDEDDCEIIRIIS
ARQVTKAERNKYEHG
Download Length: 288 bp
>T111589 NZ_CP032285:c353161-352874 [Acinetobacter sp. WCHA55]
ATGGAACAGTATTTTGAATGGGATGAGGCTAAGAATCGAAAGAATCAGAAAAAGCATGATATCTCTTTCGAAACTGCAAG
CCTTGTTTTTGAAGATCCATTACGGATCTCAATCCAAGACAGACATACCGATGGTGAAGAACGTTGGCAAACCATTGGAC
GAGTTAAAGGCGTACTAATGTTATTGGTGGCTCACACCATTTTTGATGAAGATGACTGTGAAATCATACGAATCATTAGT
GCAAGGCAAGTGACTAAAGCGGAGCGAAACAAATATGAGCATGGTTAG
ATGGAACAGTATTTTGAATGGGATGAGGCTAAGAATCGAAAGAATCAGAAAAAGCATGATATCTCTTTCGAAACTGCAAG
CCTTGTTTTTGAAGATCCATTACGGATCTCAATCCAAGACAGACATACCGATGGTGAAGAACGTTGGCAAACCATTGGAC
GAGTTAAAGGCGTACTAATGTTATTGGTGGCTCACACCATTTTTGATGAAGATGACTGTGAAATCATACGAATCATTAGT
GCAAGGCAAGTGACTAAAGCGGAGCGAAACAAATATGAGCATGGTTAG
Antitoxin
Download Length: 105 a.a. Molecular weight: 12200.86 Da Isoelectric Point: 8.4628
>AT111589 WP_004728120.1 NZ_CP032285:c352887-352573 [Acinetobacter sp. WCHA55]
MSMVRYSRKELNEKFGEKQDAEIQRLLAKGTVPDDQLDLSDIPEITDWSSAVRQNQFYRPVKQQTSIRLDADVLAWFKAQ
GKGYQTRMNEILRDAMLKELKNHQ
MSMVRYSRKELNEKFGEKQDAEIQRLLAKGTVPDDQLDLSDIPEITDWSSAVRQNQFYRPVKQQTSIRLDADVLAWFKAQ
GKGYQTRMNEILRDAMLKELKNHQ
Download Length: 315 bp
>AT111589 NZ_CP032285:c352887-352573 [Acinetobacter sp. WCHA55]
ATGAGCATGGTTAGATACTCACGCAAAGAGCTGAATGAGAAATTTGGTGAGAAGCAAGATGCTGAAATTCAACGCTTGCT
TGCTAAAGGCACGGTTCCTGATGATCAGCTAGATCTATCAGATATTCCTGAAATTACCGATTGGAGCAGTGCTGTACGCC
AAAATCAATTTTACCGCCCAGTGAAGCAACAAACTTCAATTCGGTTAGATGCTGATGTACTTGCTTGGTTCAAAGCACAA
GGCAAAGGTTATCAAACACGAATGAATGAAATTTTACGGGATGCTATGCTGAAAGAATTAAAAAATCATCAATAA
ATGAGCATGGTTAGATACTCACGCAAAGAGCTGAATGAGAAATTTGGTGAGAAGCAAGATGCTGAAATTCAACGCTTGCT
TGCTAAAGGCACGGTTCCTGATGATCAGCTAGATCTATCAGATATTCCTGAAATTACCGATTGGAGCAGTGCTGTACGCC
AAAATCAATTTTACCGCCCAGTGAAGCAACAAACTTCAATTCGGTTAGATGCTGATGTACTTGCTTGGTTCAAAGCACAA
GGCAAAGGTTATCAAACACGAATGAATGAAATTTTACGGGATGCTATGCTGAAAGAATTAAAAAATCATCAATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0A8TVQ4 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0A8TRI9 |