Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4337488..4337756 | Replicon | chromosome |
| Accession | NZ_CP032265 | ||
| Organism | Escherichia coli strain AR_0089 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4337616..4337718 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4337488..4337756 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM468_RS23615 | 4334041..4334703 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AM468_RS23620 | 4334727..4335383 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| AM468_RS23625 | 4335485..4335715 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM468_RS23630 | 4335854..4336228 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AM468_RS23635 | 4336232..4337104 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| AM468_RS23640 | 4337117..4337458 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4337488..4337756 | - | 269 | - | - | Antitoxin |
| - | 4337616..4337718 | + | 103 | - | - | Toxin |
| AM468_RS23645 | 4337853..4338509 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| AM468_RS23650 | 4338510..4338701 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AM468_RS23655 | 4338806..4339042 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM468_RS23660 | 4339159..4340598 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T111571 NZ_CP032265:4337616-4337718 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT111571 NZ_CP032265:c4337756-4337488 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
